RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 hCG_1807616A0A1W2PRN6 198 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 PRODHO43272 600 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 ENSAO43768 121 aaKnown RBP8.97□□□□□ -0.97
VPS39-208ENST00000564994 DNAJC8O75937 253 aaPredicted RBP8.97□□□□□ -0.97
VPS39-208ENST00000564994 HMGN1P05114 100 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 RNASE1P07998 156 aaKnown RBP8.97□□□□□ -0.97
VPS39-208ENST00000564994 DUX4L2P0CJ85 424 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 DUX4L3P0CJ86 424 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 DUX4L4P0CJ87 422 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 DUX4L5P0CJ88 424 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 DUX4L6P0CJ89 424 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 DUX4L7P0CJ90 424 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 ANXA8P13928 327 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 MMP9P14780 707 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 HOXB6P17509 224 aaKnown RBP8.97□□□□□ -0.97
VPS39-208ENST00000564994 ALOX5APP20292 161 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 CFHR2P36980 270 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 MZT1Q08AG7 82 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 KCNJ8Q15842 424 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 RUSC1-AS1Q66K80 236 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 DUX4L9Q6RFH8 374 aaPredicted RBP8.97□□□□□ -0.97
VPS39-208ENST00000564994 WDR82Q6UXN9 313 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 ZNF454Q8N9F8 522 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 LRRC29Q8WV35 223 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 ITPKCQ96DU7 683 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 SEH1LQ96EE3 360 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 TBX15Q96SF7 602 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 PCGF1Q9BSM1 259 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 CADM1Q9BY67 442 aaKnown RBP8.97□□□□□ -0.97
VPS39-208ENST00000564994 FGF23Q9GZV9 251 aaPredicted RBP8.97□□□□□ -0.97
VPS39-208ENST00000564994 TLNRD1Q9H1K6 362 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 OR10A2Q9H208 303 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 SP140LQ9H930 580 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 RNPEPL1Q9HAU8 725 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 TRIM36Q9NQ86 728 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 DUX4Q9UBX2 424 aa8.97□□□□□ -0.97
VPS39-208ENST00000564994 CCDC182A6NF36 153 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 PRR32B1ATL7 298 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 ZNF879B4DU55 563 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 CLDN34H7C241 214 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 DVL1O14640 695 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 GSC2O15499 205 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 NDUFA2O43678 99 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 TIPRLO75663 272 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 AMY2BP19961 511 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 CFL1P23528 166 aaKnown RBP8.96□□□□□ -0.98
VPS39-208ENST00000564994 MTNR1AP48039 350 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 DAPP51397 102 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 PSMA6P60900 246 aaKnown RBP8.96□□□□□ -0.98
VPS39-208ENST00000564994 RPS7P62081 194 aaKnown RBP8.96□□□□□ -0.98
VPS39-208ENST00000564994 APOFQ13790 326 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 DEFB112Q30KQ8 113 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 WDR38Q5JTN6 314 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 SLC35D3Q5M8T2 416 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 CD276Q5ZPR3 534 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 FAHD1Q6P587 224 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 BTN2A1Q7KYR7 527 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 HIST2H2ABQ8IUE6 130 aaPredicted RBP8.96□□□□□ -0.98
VPS39-208ENST00000564994 GALNT4Q8N4A0 578 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 CSNK2A3Q8NEV1 391 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 OR8B12Q8NGG6 310 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 UTP4Q969X6 686 aaKnown RBP8.96□□□□□ -0.98
VPS39-208ENST00000564994 CCL13Q99616 98 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 PAPOLGQ9BWT3 736 aaKnown RBP8.96□□□□□ -0.98
VPS39-208ENST00000564994 PRDM13Q9H4Q3 707 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 RGCCQ9H4X1 137 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 YY1AP1Q9H869 796 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 ZMAT3Q9HA38 289 aaKnown RBP8.96□□□□□ -0.98
VPS39-208ENST00000564994 TVP23BQ9NYZ1 205 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 KAAG1Q9UBP8 84 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 LRP12Q9Y561 859 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 PCDHGB1Q9Y5G3 927 aa8.96□□□□□ -0.98
VPS39-208ENST00000564994 CENPVL3A0A0U1RRI6 287 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 ZNF850A8MQ14 1090 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 SRRM5B3KS81 715 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 PSMD9O00233 223 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 CDIPTO14735 213 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 TMPRSS2O15393 492 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 HOXA3O43365 443 aaPredicted RBP8.95□□□□□ -0.98
VPS39-208ENST00000564994 TOX4O94842 621 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 CST4P01036 141 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 LIPFP07098 398 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 MRPL3P09001 348 aaKnown RBP8.95□□□□□ -0.98
VPS39-208ENST00000564994 GNALP38405 381 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 CRISP1P54107 249 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 FOXL1Q12952 345 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 PRDX4Q13162 271 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 SNAPC1Q16533 368 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 GPR157Q5UAW9 335 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 HPSE2Q8WWQ2 592 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 OR5P3Q8WZ94 311 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 RPL3LQ92901 407 aaKnown RBP8.95□□□□□ -0.98
VPS39-208ENST00000564994 SLC25A28Q96A46 364 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 NRBF2Q96F24 287 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 WDFY2Q96P53 400 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 TEAD3Q99594 435 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 MICU1Q9BPX6 476 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 ZNF747Q9BV97 191 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 SIRPDQ9H106 197 aa8.95□□□□□ -0.98
VPS39-208ENST00000564994 PAPOLBQ9NRJ5 636 aaKnown RBP8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms