RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 RPL13AP3Q6NVV1 102 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 WDR82Q6UXN9 313 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 GDPGP1Q6ZNW5 385 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 OR5T2Q8NGG2 359 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 OR4Q3Q8NH05 313 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 REEP6Q96HR9 211 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 RHBDD3Q9Y3P4 386 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 DOCK11Q5JSL3 2073 aa13.86□□□□□ -0.19
CLN3-211ENST00000564091 SLC22A31A6NKX4 558 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 KRT36O76013 467 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 SELLP14151 372 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 GFOD2Q3B7J2 385 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 KLHL12Q53G59 568 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 HSP90B2PQ58FF3 399 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 TEX30Q5JUR7 227 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 SAMD4BQ5PRF9 694 aaKnown RBP13.85□□□□□ -0.19
CLN3-211ENST00000564091 DHRS7BQ6IAN0 325 aaPredicted RBP13.85□□□□□ -0.19
CLN3-211ENST00000564091 RASSF6Q6ZTQ3 369 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 FAM57BQ71RH2 274 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 SLC36A1Q7Z2H8 476 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 PNKDQ8N490 385 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 OR6K6Q8NGW6 343 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 FAM110DQ8TAY7 271 aaPredicted RBP13.85□□□□□ -0.19
CLN3-211ENST00000564091 NMNAT2Q9BZQ4 307 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 TBC1D23Q9NUY8 699 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 DNAJC27Q9NZQ0 273 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 ZNF319Q9P2F9 582 aa13.85□□□□□ -0.19
CLN3-211ENST00000564091 ZNF816-ZNF321PA0A0X1KG74 233 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 hCG_38984A0A1B0GV85 526 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 RNASEK-C17orf49H0YIS7 233 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 NDUFB3O43676 98 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 SOX14O95416 240 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 TFF1P04155 84 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 FBP1P09467 338 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 HSD11B1P28845 292 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 SLC15A1P46059 708 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 TGM4P49221 684 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 SLC25A1P53007 311 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 GRB2P62993 217 aaKnown RBP13.84□□□□□ -0.19
CLN3-211ENST00000564091 KLRD1Q13241 179 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 EIF2B1Q14232 305 aaKnown RBP13.84□□□□□ -0.19
CLN3-211ENST00000564091 LINC01590Q5TEZ4 76 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 PRSS45Q7RTY3 260 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 PGAM4Q8N0Y7 254 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 Q8N7P7 452 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 AQP11Q8NBQ7 271 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 LRTOMTQ8WZ04 291 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 DCTN5Q9BTE1 182 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 PAPOLGQ9BWT3 736 aaKnown RBP13.84□□□□□ -0.19
CLN3-211ENST00000564091 FAM107BQ9H098 131 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 WDR13Q9H1Z4 485 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 C16orf95Q9H693 158 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 BRD7Q9NPI1 651 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 SNTG1Q9NSN8 517 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 ARMC1Q9NVT9 282 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 ZNRD1Q9P1U0 126 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 VPREB3Q9UKI3 123 aa13.84□□□□□ -0.19
CLN3-211ENST00000564091 PRPF19Q9UMS4 504 aaKnown RBP13.84□□□□□ -0.19
CLN3-211ENST00000564091 NPFFO15130 113 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 CCNB2O95067 398 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 EEF1B2P24534 225 aaKnown RBP13.83□□□□□ -0.2
CLN3-211ENST00000564091 NAA10P41227 235 aaPredicted RBP13.83□□□□□ -0.2
CLN3-211ENST00000564091 GSK3AP49840 483 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 ZNF121P58317 390 aaPredicted RBP13.83□□□□□ -0.2
CLN3-211ENST00000564091 STUMQ69YW2 141 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 CYP2R1Q6VVX0 501 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 CMTM4Q8IZR5 234 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 OR6N2Q8NGY6 317 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 H1FXQ92522 213 aaKnown RBP13.83□□□□□ -0.2
CLN3-211ENST00000564091 RPL3LQ92901 407 aaKnown RBP13.83□□□□□ -0.2
CLN3-211ENST00000564091 C12orf43Q96C57 262 aaKnown RBP13.83□□□□□ -0.2
CLN3-211ENST00000564091 AMELYQ99218 206 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 MED20Q9H944 212 aa13.83□□□□□ -0.2
CLN3-211ENST00000564091 CAB39Q9Y376 341 aaPredicted RBP13.83□□□□□ -0.2
CLN3-211ENST00000564091 BTBD17A6NE02 478 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 FAM183AA6NL82 134 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 TIPRLO75663 272 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 TSPAN9O75954 239 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 GNALP38405 381 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 EGR3Q06889 387 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 LRRC10Q5BKY1 277 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 ATPAF1Q5TC12 328 aaPredicted RBP13.82□□□□□ -0.2
CLN3-211ENST00000564091 METAP1DQ6UB28 335 aaPredicted RBP13.82□□□□□ -0.2
CLN3-211ENST00000564091 ERI1Q8IV48 349 aaKnown RBP13.82□□□□□ -0.2
CLN3-211ENST00000564091 GALNT4Q8N4A0 578 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 LINC00471Q8N535 108 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 OR2T33Q8NG76 320 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 NPRL2Q8WTW4 380 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 RNF133Q8WVZ7 376 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 TNFRSF14Q92956 283 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 ITPKCQ96DU7 683 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 MICU1Q9BPX6 476 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 ABHD6Q9BV23 337 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 TLNRD1Q9H1K6 362 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 OR10A2Q9H208 303 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 TOR3AQ9H497 397 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 HAO2Q9NYQ3 351 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 ZNF391Q9UJN7 358 aa13.82□□□□□ -0.2
CLN3-211ENST00000564091 MEIOCA2RUB1 952 aa13.81□□□□□ -0.2
CLN3-211ENST00000564091 GPR37O15354 613 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms