RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 DOK3Q7L591 496 aa14.03□□□□□ -0.16
CLK3-210ENST00000563112 GCSAMQ8N6F7 178 aa14.03□□□□□ -0.16
CLK3-210ENST00000563112 OR1M1Q8NGA1 313 aa14.03□□□□□ -0.16
CLK3-210ENST00000563112 TEAD3Q99594 435 aa14.03□□□□□ -0.16
CLK3-210ENST00000563112 ABCB9Q9NP78 766 aa14.03□□□□□ -0.16
CLK3-210ENST00000563112 KRT84Q9NSB2 600 aa14.03□□□□□ -0.16
CLK3-210ENST00000563112 H2AFY2Q9P0M6 372 aaPredicted RBP14.03□□□□□ -0.16
CLK3-210ENST00000563112 ZNF319Q9P2F9 582 aa14.03□□□□□ -0.16
CLK3-210ENST00000563112 RHBDD3Q9Y3P4 386 aa14.03□□□□□ -0.16
CLK3-210ENST00000563112 TMEM89A2RUT3 159 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 G3V2T6 193 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 LHBP01229 141 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 LIPFP07098 398 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 FASP25445 335 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 DAPP51397 102 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 UBA52P62987 128 aaKnown RBP14.02□□□□□ -0.17
CLK3-210ENST00000563112 BAMBIQ13145 260 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 PTGES3Q15185 160 aaKnown RBP14.02□□□□□ -0.17
CLK3-210ENST00000563112 ATP6AP1Q15904 470 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 C1orf146Q5VVC0 180 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 DEGS2Q6QHC5 323 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 BCL6BQ8N143 479 aaPredicted RBP14.02□□□□□ -0.17
CLK3-210ENST00000563112 GALNT4Q8N4A0 578 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 LRRC29Q8WV35 223 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 DACT3Q96B18 629 aaPredicted RBP14.02□□□□□ -0.17
CLK3-210ENST00000563112 RTL8AQ9BWD3 113 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 MROQ9BYG7 248 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 ZMAT3Q9HA38 289 aaKnown RBP14.02□□□□□ -0.17
CLK3-210ENST00000563112 ESM1Q9NQ30 184 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 KLHDC2Q9Y2U9 406 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 LRP12Q9Y561 859 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 TMEM14AQ9Y6G1 99 aa14.02□□□□□ -0.17
CLK3-210ENST00000563112 IGHV3OR16-10A0A075B7F0 116 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 ACOD1A6NK06 481 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 GYPAP02724 150 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 IGHV4-38-2P0DP08 117 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 MUC1P15941 1255 aaPredicted RBP14.01□□□□□ -0.17
CLK3-210ENST00000563112 COMPP49747 757 aaPredicted RBP14.01□□□□□ -0.17
CLK3-210ENST00000563112 HCCSP53701 268 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 HOXA4Q00056 320 aaPredicted RBP14.01□□□□□ -0.17
CLK3-210ENST00000563112 MICBQ29980 383 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 TEX36Q5VZQ5 186 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 FAM90A1Q86YD7 464 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 C3orf56Q8N813 242 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 PNLDC1Q8NA58 520 aaKnown RBP14.01□□□□□ -0.17
CLK3-210ENST00000563112 ASB17Q8WXJ9 295 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 ITFG2Q969R8 447 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 HIST1H2AAQ96QV6 131 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 CTSZQ9UBR2 303 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 ENOPH1Q9UHY7 261 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 AP4S1Q9Y587 144 aa14.01□□□□□ -0.17
CLK3-210ENST00000563112 TRAV40A0A0B4J280 105 aa14□□□□□ -0.17
CLK3-210ENST00000563112 TMEM269A0A1B0GVZ9 245 aa14□□□□□ -0.17
CLK3-210ENST00000563112 TMEM210A6NLX4 147 aa14□□□□□ -0.17
CLK3-210ENST00000563112 ZNF850A8MQ14 1090 aa14□□□□□ -0.17
CLK3-210ENST00000563112 TNFRSF13BO14836 293 aaPredicted RBP14□□□□□ -0.17
CLK3-210ENST00000563112 ZNF254O75437 659 aa14□□□□□ -0.17
CLK3-210ENST00000563112 ECDO95905 644 aaPredicted RBP14□□□□□ -0.17
CLK3-210ENST00000563112 CST4P01036 141 aa14□□□□□ -0.17
CLK3-210ENST00000563112 MRPL3P09001 348 aaKnown RBP14□□□□□ -0.17
CLK3-210ENST00000563112 FCGR1AP12314 374 aa14□□□□□ -0.17
CLK3-210ENST00000563112 PRTN3P24158 256 aa14□□□□□ -0.17
CLK3-210ENST00000563112 MAP2K3P46734 347 aa14□□□□□ -0.17
CLK3-210ENST00000563112 FGF12P61328 243 aa14□□□□□ -0.17
CLK3-210ENST00000563112 PRDX4Q13162 271 aa14□□□□□ -0.17
CLK3-210ENST00000563112 TUSC1Q2TAM9 212 aa14□□□□□ -0.17
CLK3-210ENST00000563112 C11orf91Q3C1V1 193 aa14□□□□□ -0.17
CLK3-210ENST00000563112 GPR157Q5UAW9 335 aa14□□□□□ -0.17
CLK3-210ENST00000563112 WDR82Q6UXN9 313 aa14□□□□□ -0.17
CLK3-210ENST00000563112 C9orf139Q6ZV77 190 aa14□□□□□ -0.17
CLK3-210ENST00000563112 KCTD8Q6ZWB6 473 aa14□□□□□ -0.17
CLK3-210ENST00000563112 WDR86Q86TI4 376 aa14□□□□□ -0.17
CLK3-210ENST00000563112 ZDHHC13Q8IUH4 622 aa14□□□□□ -0.17
CLK3-210ENST00000563112 C11orf53Q8IXP5 236 aa14□□□□□ -0.17
CLK3-210ENST00000563112 OR8B12Q8NGG6 310 aa14□□□□□ -0.17
CLK3-210ENST00000563112 FAM81AQ8TBF8 368 aa14□□□□□ -0.17
CLK3-210ENST00000563112 PIGCQ92535 297 aa14□□□□□ -0.17
CLK3-210ENST00000563112 ITPKCQ96DU7 683 aa14□□□□□ -0.17
CLK3-210ENST00000563112 CNN2Q99439 309 aaKnown RBP14□□□□□ -0.17
CLK3-210ENST00000563112 KAAG1Q9UBP8 84 aa14□□□□□ -0.17
CLK3-210ENST00000563112 IGHV3OR15-7A0A075B7D8 119 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 CCDC182A6NF36 153 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 ZNF879B4DU55 563 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 C22orf46C9J442 243 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 CDIPTO14735 213 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 TMPRSS2O15393 492 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 PLATP00750 562 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 EGR1P18146 543 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 CFPP27918 469 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 DCTDP32321 178 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 CFHR2P36980 270 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 BPIFB3P59826 476 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 ACTR3P61158 418 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 CSNK2BP67870 215 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 POU4F2Q12837 409 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 ZNF829Q3KNS6 432 aaPredicted RBP13.99□□□□□ -0.17
CLK3-210ENST00000563112 MEPCEQ7L2J0 689 aaKnown RBP13.99□□□□□ -0.17
CLK3-210ENST00000563112 COMMD2Q86X83 199 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 ZDHHC23Q8IYP9 409 aa13.99□□□□□ -0.17
CLK3-210ENST00000563112 OR5P3Q8WZ94 311 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms