RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 GP6Q9HCN6 339 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 BIN3Q9NQY0 253 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 PLA2G3Q9NZ20 509 aa11.14□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF292O60281 2723 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 KNTC1P50748 2209 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 A0A0A6YYH2 397 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 A6NJ64 397 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 PRSS44E7EML9 344 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 DNASE2O00115 360 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-229ENST00000557348 FARS2O95363 451 aaKnown RBP11.13□□□□□ -0.63
SHMT2-229ENST00000557348 F10P00742 488 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 TTRP02766 147 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 HPXP02790 462 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 CCL1P22362 96 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 SRP9P49458 86 aaKnown RBP11.13□□□□□ -0.63
SHMT2-229ENST00000557348 STARP49675 285 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 ENDOGQ14249 297 aaKnown RBP11.13□□□□□ -0.63
SHMT2-229ENST00000557348 RAB35Q15286 201 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 OTPQ5XKR4 325 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 IGFL2Q6UWQ7 119 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 DOK3Q7L591 496 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 LINGO2Q7L985 606 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF283Q8N7M2 679 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 PXT1Q8NFP0 134 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 OR1S1Q8NH92 325 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 PTX4Q96A99 478 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 C10orf35Q96D05 121 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 SMAD5Q99717 465 aaKnown RBP11.13□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF552Q9H707 407 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-229ENST00000557348 MYOZ1Q9NP98 299 aaPredicted RBP11.13□□□□□ -0.63
SHMT2-229ENST00000557348 PNRC2Q9NPJ4 139 aaKnown RBP11.13□□□□□ -0.63
SHMT2-229ENST00000557348 OR5V1Q9UGF6 321 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 OPN4Q9UHM6 478 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF391Q9UJN7 358 aa11.13□□□□□ -0.63
SHMT2-229ENST00000557348 A0A0U1RQV5 110 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 LOC100289279A0A1B0GTE1 492 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 LOC390937A0A1W2PQ73 354 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 FAM166BA8MTA8 275 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 RER1O15258 196 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 MRPL33O75394 65 aaKnown RBP11.12□□□□□ -0.63
SHMT2-229ENST00000557348 SCGNO76038 276 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 LPLP06858 475 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF20P17024 532 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 CX3CR1P49238 355 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 CCR6P51684 374 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 RBMS2Q15434 407 aaKnown RBP11.12□□□□□ -0.63
SHMT2-229ENST00000557348 TGIF1Q15583 401 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 FAM189A2Q15884 450 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 CMTM4Q8IZR5 234 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 SYNPRQ8TBG9 265 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 TMEM38BQ9NVV0 291 aa11.12□□□□□ -0.63
SHMT2-229ENST00000557348 NOSIPQ9Y314 301 aaKnown RBP11.12□□□□□ -0.63
SHMT2-229ENST00000557348 P2RY10O00398 339 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 SNAPINO95295 136 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 FCGR2AP12318 317 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 HTR2CP28335 458 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 OTX1P32242 354 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-229ENST00000557348 MAGEB1P43366 347 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 TNFSF10P50591 281 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 ZNF121P58317 390 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-229ENST00000557348 SRSF4Q08170 494 aaKnown RBP11.11□□□□□ -0.63
SHMT2-229ENST00000557348 TMEM69Q5SWH9 247 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 ABHD12BQ7Z5M8 362 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-229ENST00000557348 MCEMP1Q8IX19 187 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 SKA3Q8IX90 412 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 CCDC107Q8WV48 283 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 ROBO4Q8WZ75 1007 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 SLC25A38Q96DW6 304 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 ZFP3Q96NJ6 502 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 HES7Q9BYE0 225 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 PRRG4Q9BZD6 226 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 NKX6-2Q9C056 277 aaPredicted RBP11.11□□□□□ -0.63
SHMT2-229ENST00000557348 SLCO5A1Q9H2Y9 848 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 BCO1Q9HAY6 547 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 TMEM138Q9NPI0 162 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 TAS2R4Q9NYW5 299 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 UPB1Q9UBR1 384 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 CFAP54Q96N23 3096 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 FREM3P0C091 2139 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 A0A087WV48 116 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 TRAV17A0A0B4J275 112 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 RFPL4AA6NLU0 287 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 DHRS7CA6NNS2 312 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 F5H5P2 479 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 RFPL4AL1F8VTS6 287 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 F8W036 122 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 MT-ND4P03905 459 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 BDKRB2P30411 391 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 GNALP38405 381 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 PHYHD1Q5SRE7 291 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 C1orf100Q5SVJ3 147 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 ELP2Q6IA86 826 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 FAM166AQ6J272 317 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 ANKRD16Q6P6B7 361 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 DRAM2Q6UX65 266 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 MOB3CQ70IA8 216 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 VASH2Q86V25 355 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 SVBPQ8N300 66 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 OR1M1Q8NGA1 313 aa11.11□□□□□ -0.63
SHMT2-229ENST00000557348 FAM3DQ96BQ1 224 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms