RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 ALG8Q9BVK2 526 aa11.48□□□□□ -0.57
SHMT2-228ENST00000557302 NARFLQ9H6Q4 476 aa11.48□□□□□ -0.57
SHMT2-228ENST00000557302 C14orf119Q9NWQ9 140 aa11.48□□□□□ -0.57
SHMT2-228ENST00000557302 WIPI2Q9Y4P8 454 aa11.48□□□□□ -0.57
SHMT2-228ENST00000557302 ABCA1O95477 2261 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 LRP5LA4QPB2 252 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 LRRC30A6NM36 301 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 ANXA2P2A6NMY6 339 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 J3QLW9 94 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 MTRF1O75570 445 aaKnown RBP11.47□□□□□ -0.57
SHMT2-228ENST00000557302 CST4P01036 141 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 HEXAP06865 529 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 ZNF19P17023 458 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 PSMB10P40306 273 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 OR12D2P58182 307 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 RIPPLY1Q0D2K3 151 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 GALEQ14376 348 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 PRAMEF6Q5VXH4 476 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 THAP5Q7Z6K1 395 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 LHFPL3Q86UP9 236 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 SYS1Q8N2H4 156 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 SEMA6DQ8NFY4 1073 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 HPS1Q92902 700 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 C4orf36Q96KX1 117 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 ABCB9Q9NP78 766 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 FGF20Q9NP95 211 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-228ENST00000557302 ERVK13-1Q9NX77 482 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 DCAF16Q9NXF7 216 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 SLC22A13Q9Y226 551 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 MPC1Q9Y5U8 109 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 CR1P17927 2039 aa11.47□□□□□ -0.57
SHMT2-228ENST00000557302 ZNF816-ZNF321PA0A0X1KG74 233 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 ISPDA4D126 451 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 ZNF850A8MQ14 1090 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 P2RY10O00398 339 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 DHRS3O75911 302 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 PTBP3O95758 552 aaKnown RBP11.46□□□□□ -0.57
SHMT2-228ENST00000557302 IRF2P14316 349 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 DCKP27707 260 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 GZMKP49863 264 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 KRTAP1-1Q07627 177 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 HNRNPA0Q13151 305 aaKnown RBP11.46□□□□□ -0.57
SHMT2-228ENST00000557302 PRDX4Q13162 271 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 ODF4Q2M2E3 257 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 WDR38Q5JTN6 314 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 ZBTB37Q5TC79 503 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 IZUMO2Q6UXV1 221 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 DOK3Q7L591 496 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 EGFL6Q8IUX8 553 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 PLPP7Q8NBV4 271 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 OR11L1Q8NGX0 322 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 CLDND2Q8NHS1 167 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 ZNF420Q8TAQ5 688 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-228ENST00000557302 Q8TCH9 128 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 PIGCQ92535 297 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 MICU1Q9BPX6 476 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 JAM3Q9BX67 310 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 FN3KRPQ9HA64 309 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 UFSP2Q9NUQ7 469 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 ENPP5Q9UJA9 477 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 PIGLQ9Y2B2 252 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 NPTNQ9Y639 398 aa11.46□□□□□ -0.57
SHMT2-228ENST00000557302 HIVEP2P31629 2446 aa11.46□□□□□ -0.58
SHMT2-228ENST00000557302 LOC100289279A0A1B0GTE1 492 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 A0A1B0GTI1 187 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 A0A1B0GVI7 797 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 TMEM178BH3BS89 294 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 WNT9BO14905 357 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 SYT7O43581 403 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 CD5LO43866 347 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 CYB5R3P00387 301 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-228ENST00000557302 GRPP07492 148 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 HTR1AP08908 422 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 UBCP0CG48 685 aaKnown RBP11.45□□□□□ -0.58
SHMT2-228ENST00000557302 IGHV4-31P0DP07 118 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 FAHP16930 419 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 CCL1P22362 96 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 IL2RGP31785 369 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 PMELP40967 661 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 HSPA13P48723 471 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 BTG1P62324 171 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 MPPED2Q15777 294 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 ZNF181Q2M3W8 571 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 CYB5R2Q6BCY4 276 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 FDX2Q6P4F2 183 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 Q71RC1 249 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-228ENST00000557302 ZDHHC23Q8IYP9 409 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 C1orf87Q8N0U7 546 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 PRSS35Q8N3Z0 413 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 OR2G2Q8NGZ5 317 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 FBLIM1Q8WUP2 373 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 RNF166Q96A37 237 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-228ENST00000557302 ITPKCQ96DU7 683 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 PELI1Q96FA3 418 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 HIST1H2AAQ96QV6 131 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 GAL3ST1Q99999 423 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 ZNF649Q9BS31 505 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 RTL8AQ9BWD3 113 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 PPP1R3EQ9H7J1 279 aa11.45□□□□□ -0.58
SHMT2-228ENST00000557302 DIMT1Q9UNQ2 313 aaKnown RBP11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms