RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CYTL1Q9NRR1 136 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 GPR132Q9UNW8 380 aa6.61□□□□□ -1.35
LIMA1-213ENST00000552720 IGHV3-15A0A0B4J1V0 119 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 IGHG1P01857 330 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 GLRA1P23415 457 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 GPR85P60893 370 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SGCAQ16586 387 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM176BQ3YBM2 270 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM128Q5BJH2 165 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 PHYHD1Q5SRE7 291 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 PDSS1Q5T2R2 415 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM71Q6P5X7 295 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SLC25A47Q6Q0C1 308 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 DRAM2Q6UX65 266 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 PGAP1Q75T13 922 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM17Q86X19 198 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 FOXRED2Q8IWF2 684 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF283Q8N7M2 679 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 CADM4Q8NFZ8 388 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 NUBPLQ8TB37 319 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 LYZL4Q96KX0 146 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 AIFM2Q9BRQ8 373 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 TGIF2Q9GZN2 237 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF576Q9H609 170 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 FANCFQ9NPI8 374 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 OR2S2Q9NQN1 319 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 FSCN3Q9NQT6 498 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SLC39A1Q9NY26 324 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SEMA5BQ9P283 1151 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 MYOTQ9UBF9 498 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SRPK3Q9UPE1 567 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 WIF1Q9Y5W5 379 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 IGLV3-12A0A075B6K2 115 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 IGKV1D-8A0A087WSZ0 117 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 OR5H15A6NDH6 313 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 F5H5K5 113 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 MFNGO00587 321 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SCRG1O75711 98 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SUMO3P55854 103 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-213ENST00000552720 AADACL3Q5VUY0 350 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 FAHD2BQ6P2I3 314 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-213ENST00000552720 GTPBP8Q8N3Z3 284 aaPredicted RBP6.6□□□□□ -1.35
LIMA1-213ENST00000552720 LRRC18Q8N456 261 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 WDSUB1Q8N9V3 476 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 PNLDC1Q8NA58 520 aaKnown RBP6.6□□□□□ -1.35
LIMA1-213ENST00000552720 PHYHIPLQ96FC7 376 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 FAHD2AQ96GK7 314 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 MRGPRX4Q96LA9 322 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 TSNAXQ99598 290 aaKnown RBP6.6□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF416Q9BWM5 594 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SDHAF3Q9NRP4 125 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 FBLN5Q9UBX5 448 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 FLVCR1Q9Y5Y0 555 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 SHANK1Q9Y566 2161 aa6.6□□□□□ -1.35
LIMA1-213ENST00000552720 TEX13DA0A0J9YY54 714 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 A0A1B0GW55 424 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 TMEM218A2RU14 115 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 F8VVB4 439 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 F8VWA3 439 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 G3V3Y1 287 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 STMND1H3BQB6 276 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 BCAT2O15382 392 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 FGF16O43320 207 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 ATG12O94817 140 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF205O95201 554 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 CHRM2P08172 466 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 HOXB5P09067 269 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 DBHP09172 617 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 DUX4L2P0CJ85 424 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 DUX4L3P0CJ86 424 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 DUX4L4P0CJ87 422 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 DUX4L5P0CJ88 424 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 DUX4L6P0CJ89 424 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 DUX4L7P0CJ90 424 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF43P17038 809 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 AMY2BP19961 511 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 SERPINA2P20848 420 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 CLDN17P56750 224 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 RAB32Q13637 225 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 SHBQ15464 509 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 NKAPLQ5M9Q1 402 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 GUSBP11Q6P575 273 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 WDR74Q6RFH5 385 aaPredicted RBP6.59□□□□□ -1.35
LIMA1-213ENST00000552720 GALNTL5Q7Z4T8 443 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 LDLRAD3Q86YD5 345 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 CBLN2Q8IUK8 224 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 CLRN3Q8NCR9 226 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 OR2M3Q8NG83 312 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 OR51T1Q8NGJ9 327 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 OR4A4PQ8NGN8 299 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 OR14K1Q8NGZ2 314 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 KCNG3Q8TAE7 436 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 RNF138Q8WVD3 245 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 PIGTQ969N2 578 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 SPSB2Q99619 263 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 PIGMQ9H3S5 423 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 ZNF581Q9P0T4 197 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 DUX4Q9UBX2 424 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 A0A1W2PQM1 296 aa6.59□□□□□ -1.35
LIMA1-213ENST00000552720 MASP2O00187 686 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms