RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 GNALP38405 381 aa13.56□□□□□ -0.24
VPS29-207ENST00000549970 CD276Q5ZPR3 534 aa13.56□□□□□ -0.24
VPS29-207ENST00000549970 C11orf53Q8IXP5 236 aa13.56□□□□□ -0.24
VPS29-207ENST00000549970 ZNF454Q8N9F8 522 aa13.56□□□□□ -0.24
VPS29-207ENST00000549970 CSNK2A3Q8NEV1 391 aa13.56□□□□□ -0.24
VPS29-207ENST00000549970 SLC25A28Q96A46 364 aa13.56□□□□□ -0.24
VPS29-207ENST00000549970 TEX12Q9BXU0 123 aa13.56□□□□□ -0.24
VPS29-207ENST00000549970 KIF17Q9P2E2 1029 aa13.56□□□□□ -0.24
VPS29-207ENST00000549970 TMPRSS2O15393 492 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 DNAJC8O75937 253 aaPredicted RBP13.55□□□□□ -0.24
VPS29-207ENST00000549970 SFTPBP07988 381 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 CFHR2P36980 270 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 SLC9A3R2Q15599 337 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 SLC35D3Q5M8T2 416 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 GPR157Q5UAW9 335 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 TEX36Q5VZQ5 186 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 RGCCQ9H4X1 137 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 RNPEPL1Q9HAU8 725 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 SLC25A19Q9HC21 320 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 TVP23BQ9NYZ1 205 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 LAMP5Q9UJQ1 280 aa13.55□□□□□ -0.24
VPS29-207ENST00000549970 ANXA2P2A6NMY6 339 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 ZNF879B4DU55 563 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 DVL1O14640 695 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 CDIPTO14735 213 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 FCN3O75636 299 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 TIPRLO75663 272 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 RNASE1P07998 156 aaKnown RBP13.54□□□□□ -0.24
VPS29-207ENST00000549970 SLC2A5P22732 501 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 ACKR3P25106 362 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 HCCSP53701 268 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 PSMA6P60900 246 aaKnown RBP13.54□□□□□ -0.24
VPS29-207ENST00000549970 ELF3P78545 371 aaPredicted RBP13.54□□□□□ -0.24
VPS29-207ENST00000549970 FOXL1Q12952 345 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 APOFQ13790 326 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 SNAPC1Q16533 368 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 MICBQ29980 383 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 DEFB112Q30KQ8 113 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 RUSC1-AS1Q66K80 236 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 WDR82Q6UXN9 313 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 KRT77Q7Z794 578 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 FTMTQ8N4E7 242 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 PAPD5Q8NDF8 572 aaKnown RBP13.54□□□□□ -0.24
VPS29-207ENST00000549970 OR8B12Q8NGG6 310 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 ST8SIA4Q92187 359 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 ITPKCQ96DU7 683 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 MICU1Q9BPX6 476 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 PAPOLBQ9NRJ5 636 aaKnown RBP13.54□□□□□ -0.24
VPS29-207ENST00000549970 LRP12Q9Y561 859 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 PCDHGB1Q9Y5G3 927 aa13.54□□□□□ -0.24
VPS29-207ENST00000549970 A0A1B0GW55 424 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 ZNF850A8MQ14 1090 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 CLDN34H7C241 214 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 TOX4O94842 621 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 LIPFP07098 398 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 MRPL3P09001 348 aaKnown RBP13.53□□□□□ -0.24
VPS29-207ENST00000549970 DUX4L2P0CJ85 424 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 DUX4L3P0CJ86 424 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 DUX4L4P0CJ87 422 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 DUX4L5P0CJ88 424 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 DUX4L6P0CJ89 424 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 DUX4L7P0CJ90 424 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 CRISP1P54107 249 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 GMFBP60983 142 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 IL5RAQ01344 420 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 PRDX4Q13162 271 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 SNCBQ16143 134 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 DUX4L9Q6RFH8 374 aaPredicted RBP13.53□□□□□ -0.24
VPS29-207ENST00000549970 BTN2A1Q7KYR7 527 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 FGFRL1Q8N441 504 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 PNLDC1Q8NA58 520 aaKnown RBP13.53□□□□□ -0.24
VPS29-207ENST00000549970 PIGCQ92535 297 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 TAF15Q92804 592 aaKnown RBP eCLIP13.53□□□□□ -0.24
VPS29-207ENST00000549970 ZDHHC16Q969W1 377 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 SEH1LQ96EE3 360 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 LYZL4Q96KX0 146 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 WDFY2Q96P53 400 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 TBX15Q96SF7 602 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 CCL13Q99616 98 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 RTL8AQ9BWD3 113 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 FAM53CQ9NYF3 392 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 DUX4Q9UBX2 424 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 MPC1Q9Y5U8 109 aa13.53□□□□□ -0.24
VPS29-207ENST00000549970 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.52□□□□□ -0.25
VPS29-207ENST00000549970 PSMD9O00233 223 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 P2RY10O00398 339 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 HOXA3O43365 443 aaPredicted RBP13.52□□□□□ -0.25
VPS29-207ENST00000549970 MMP9P14780 707 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 MUC1P15941 1255 aaPredicted RBP13.52□□□□□ -0.25
VPS29-207ENST00000549970 ALOX5APP20292 161 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 WDR38Q5JTN6 314 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 METTL11BQ5VVY1 283 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 KCTD8Q6ZWB6 473 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 GALNT4Q8N4A0 578 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 DNAJC9Q8WXX5 260 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 RPL3LQ92901 407 aaKnown RBP13.52□□□□□ -0.25
VPS29-207ENST00000549970 NRBF2Q96F24 287 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 PKP2Q99959 881 aa13.52□□□□□ -0.25
VPS29-207ENST00000549970 CADM1Q9BY67 442 aaKnown RBP13.52□□□□□ -0.25
VPS29-207ENST00000549970 TTTY10Q9BZA0 68 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms