RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 DUX4L6P0CJ89 424 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 DUX4L7P0CJ90 424 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 DLX1P56177 255 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 ELF3P78545 371 aaPredicted RBP10.49□□□□□ -0.73
USP28-212ENST00000544750 PRB3Q04118 309 aaPredicted RBP10.49□□□□□ -0.73
USP28-212ENST00000544750 OR8G1Q15617 311 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 C11orf88Q6PI97 169 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 CRIP3Q6Q6R5 217 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 DUX4L9Q6RFH8 374 aaPredicted RBP10.49□□□□□ -0.73
USP28-212ENST00000544750 CFAP77Q6ZQR2 320 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 C1orf122Q6ZSJ8 110 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 RASSF6Q6ZTQ3 369 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 PGAP1Q75T13 922 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 SPATA24Q86W54 205 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 C11orf44Q8N8P7 122 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 NMNAT3Q96T66 252 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 DDOQ99489 341 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 NIPSNAP1Q9BPW8 284 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 IFT27Q9BW83 186 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 PPA2Q9H2U2 334 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 TOR3AQ9H497 397 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 RERGLQ9H628 205 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 PNRC2Q9NPJ4 139 aaKnown RBP10.49□□□□□ -0.73
USP28-212ENST00000544750 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.49□□□□□ -0.73
USP28-212ENST00000544750 SIRT7Q9NRC8 400 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 DUX4Q9UBX2 424 aa10.49□□□□□ -0.73
USP28-212ENST00000544750 ARRDC5A6NEK1 342 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 ANKRD61A6NGH8 418 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 CD300LBA8K4G0 201 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 F5H5K5 113 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 FKBP6O75344 327 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 ATP5HO75947 161 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 SOX14O95416 240 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 GUCA2AQ02747 115 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 POU4F2Q12837 409 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 GK3PQ14409 553 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 SLC18B1Q6NT16 456 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 C11orf53Q8IXP5 236 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 HS3ST5Q8IZT8 346 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 OR6V1Q8N148 313 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 KLHDC1Q8N7A1 406 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 SDR9C7Q8NEX9 313 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 OR10G2Q8NGC3 310 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 OR4Q3Q8NH05 313 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 OR4K13Q8NH42 304 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 C8orf46Q8TAG6 207 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 SPRYD4Q8WW59 207 aaPredicted RBP10.48□□□□□ -0.73
USP28-212ENST00000544750 ST8SIA4Q92187 359 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 PHF21AQ96BD5 680 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 ITPKCQ96DU7 683 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 ADAT1Q9BUB4 502 aaKnown RBP10.48□□□□□ -0.73
USP28-212ENST00000544750 FN3KQ9H479 309 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 C1orf123Q9NWV4 160 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 POLR1DQ9Y2S0 133 aa10.48□□□□□ -0.73
USP28-212ENST00000544750 NOP16Q9Y3C1 178 aaKnown RBP10.48□□□□□ -0.73
USP28-212ENST00000544750 IGHV3OR15-7A0A075B7D8 119 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 OR6C68A6NDL8 312 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.47□□□□□ -0.73
USP28-212ENST00000544750 IDH3BO43837 385 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 XPNPEP2O43895 674 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 LCATP04180 440 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 HOXB6P17509 224 aaKnown RBP10.47□□□□□ -0.73
USP28-212ENST00000544750 AMY2BP19961 511 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 SAA4P35542 130 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 RASSF2P50749 326 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 CBX1P83916 185 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 ZNF92Q03936 586 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 KHDRBS1Q07666 443 aaKnown RBP eCLIP10.47□□□□□ -0.73
USP28-212ENST00000544750 ECH1Q13011 328 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 MALLQ13021 153 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 KLRD1Q13241 179 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 SLC35F1Q5T1Q4 408 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 RPL13AP3Q6NVV1 102 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 CD300LDQ6UXZ3 194 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 ASRGL1Q7L266 308 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 ZBTB46Q86UZ6 589 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 LINC00346Q8IVM7 164 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 PNKDQ8N490 385 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 SPERTQ8NA61 448 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 BEND2Q8NDZ0 799 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 SLC26A10Q8NG04 563 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 GIPC3Q8TF64 312 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 UTP4Q969X6 686 aaKnown RBP10.47□□□□□ -0.73
USP28-212ENST00000544750 AJUBAQ96IF1 538 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 FEVQ99581 238 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 ATF6BQ99941 703 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 RPRD1BQ9NQG5 326 aaKnown RBP10.47□□□□□ -0.73
USP28-212ENST00000544750 ARMC1Q9NVT9 282 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 ONECUT1Q9UBC0 465 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 B9D1Q9UPM9 204 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 MAB21L2Q9Y586 359 aa10.47□□□□□ -0.73
USP28-212ENST00000544750 A0A1W2PRD5 423 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 A0A1W2PRF3 423 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 A0A1W2PRM7 423 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 ADARB2-AS1A8MUL3 147 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 VSIG8P0DPA2 414 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 MUC1P15941 1255 aaPredicted RBP10.46□□□□□ -0.73
USP28-212ENST00000544750 EEF1B2P24534 225 aaKnown RBP10.46□□□□□ -0.73
USP28-212ENST00000544750 CRABP1P29762 137 aa10.46□□□□□ -0.73
USP28-212ENST00000544750 OTX1P32242 354 aaPredicted RBP10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms