RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 TBC1D15Q8TC07 691 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 LRRC29Q8WV35 223 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 ST8SIA4Q92187 359 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 DMRTB1Q96MA1 342 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 CCT8L2Q96SF2 557 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 RTL8AQ9BWD3 113 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 NIPAL2Q9H841 368 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 BEX1Q9HBH7 125 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 SMURF1Q9HCE7 757 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 ACOXLQ9NUZ1 547 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 VNN3Q9NY84 501 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 DNAJC27Q9NZQ0 273 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 MMP24Q9Y5R2 645 aa10.88□□□□□ -0.67
RTN3-212ENST00000543123 IGHV1-69DA0A0B4J2H0 117 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 C5orf63A6NC05 138 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 FAM183AA6NL82 134 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 TMEM210A6NLX4 147 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 DVL1O14640 695 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 PRODHO43272 600 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 E2F6O75461 281 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 FAM107AO95990 144 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 IGHV1-69P01742 117 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 HMGN1P05114 100 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 LYNP07948 512 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 MMP9P14780 707 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 Q6YL49 198 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 C17orf107Q6ZR85 190 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 BTN2A1Q7KYR7 527 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 GALNT4Q8N4A0 578 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 IQCF1Q8N6M8 205 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 SCCPDHQ8NBX0 429 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 OR1M1Q8NGA1 313 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 SGK3Q96BR1 496 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 TBX15Q96SF7 602 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 NIPSNAP1Q9BPW8 284 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 CHID1Q9BWS9 393 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 C1orf21Q9H246 121 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 OR51V1Q9H2C8 321 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 YY1AP1Q9H869 796 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 MED20Q9H944 212 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 RPUSD1Q9UJJ7 312 aaKnown RBP10.87□□□□□ -0.67
RTN3-212ENST00000543123 CAB39Q9Y376 341 aaPredicted RBP10.87□□□□□ -0.67
RTN3-212ENST00000543123 MPC1Q9Y5U8 109 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 KPTNQ9Y664 436 aa10.87□□□□□ -0.67
RTN3-212ENST00000543123 CENPVL3A0A0U1RRI6 287 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 A0A1B0GVI7 797 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 FAM181BA6NEQ2 426 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 NKX6-3A6NJ46 265 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 AQP12BA6NM10 295 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 NDUFB3O43676 98 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 KNG1P01042 644 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 MDKP21741 143 aaPredicted RBP10.86□□□□□ -0.67
RTN3-212ENST00000543123 ANOS1P23352 680 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 POU1F1P28069 291 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 RAG2P55895 527 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 HOXA4Q00056 320 aaPredicted RBP10.86□□□□□ -0.67
RTN3-212ENST00000543123 MS4A2Q01362 244 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 CDONQ4KMG0 1287 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 PLBD1Q6P4A8 553 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 FIP1L1Q6UN15 594 aaKnown RBP10.86□□□□□ -0.67
RTN3-212ENST00000543123 WDR82Q6UXN9 313 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 PRSS45Q7RTY3 260 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 AQP12AQ8IXF9 295 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 TIGD4Q8IY51 512 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 PAPD5Q8NDF8 572 aaKnown RBP10.86□□□□□ -0.67
RTN3-212ENST00000543123 OTOSQ8NHW6 89 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 LHX4Q969G2 390 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 ITFG2Q969R8 447 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 SIRPDQ9H106 197 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 DNTTIP1Q9H147 329 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 TLNRD1Q9H1K6 362 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 CNTD2Q9H8S5 307 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 BRD7Q9NPI1 651 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 DNAJB11Q9UBS4 358 aa10.86□□□□□ -0.67
RTN3-212ENST00000543123 SOX21Q9Y651 276 aaPredicted RBP10.86□□□□□ -0.67
RTN3-212ENST00000543123 IGHV3OR15-7A0A075B7D8 119 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 NDUFA7O95182 113 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 MELTFP08582 738 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 OSMP13725 252 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 PSMA6P60900 246 aaKnown RBP10.85□□□□□ -0.67
RTN3-212ENST00000543123 ARF6P62330 175 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 CSNK2BP67870 215 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 GINS1Q14691 196 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 KLHL12Q53G59 568 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 LRRC10Q5BKY1 277 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 WDR38Q5JTN6 314 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 SLC35D3Q5M8T2 416 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 RUSC1-AS1Q66K80 236 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 KCTD8Q6ZWB6 473 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 WDR86Q86TI4 376 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 ADGRG5Q8IZF4 528 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 KIR3DL3Q8N743 410 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 OR10Z1Q8NGY1 313 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 FAM81AQ8TBF8 368 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 THEM6Q8WUY1 208 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 DNAJC9Q8WXX5 260 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 LRTOMTQ8WZ04 291 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 DYRK2Q92630 601 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 ITPKCQ96DU7 683 aa10.85□□□□□ -0.67
RTN3-212ENST00000543123 HIST1H2AAQ96QV6 131 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms