RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 GPR146Q96CH1 333 aa8.43□□□□□ -1.06
CLIP1-214ENST00000540539 PELI1Q96FA3 418 aa8.43□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF607Q96SK3 696 aa8.43□□□□□ -1.06
CLIP1-214ENST00000540539 HIPK2Q9H2X6 1198 aa8.43□□□□□ -1.06
CLIP1-214ENST00000540539 ZDHHC6Q9H6R6 413 aa8.43□□□□□ -1.06
CLIP1-214ENST00000540539 MRPL22Q9NWU5 206 aaKnown RBP8.43□□□□□ -1.06
CLIP1-214ENST00000540539 COLQQ9Y215 455 aaPredicted RBP8.43□□□□□ -1.06
CLIP1-214ENST00000540539 TRIOBPQ9H2D6 2365 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 WDR1O75083 606 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 CTAG2O75638 210 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 ETHE1O95571 254 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 GAPDHP04406 335 aaKnown RBP8.42□□□□□ -1.06
CLIP1-214ENST00000540539 F3P13726 295 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 RPL4P36578 427 aaKnown RBP8.42□□□□□ -1.06
CLIP1-214ENST00000540539 PBX2P40425 430 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 PTGER3P43115 390 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 PRRX1P54821 245 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 S100A10P60903 97 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 ENDOGQ14249 297 aaKnown RBP8.42□□□□□ -1.06
CLIP1-214ENST00000540539 TMEM183BQ1AE95 376 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF260Q3ZCT1 412 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 CTXN3Q4LDR2 81 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 MORN2Q502X0 79 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 ANKRD16Q6P6B7 361 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 C9orf40Q8IXQ3 194 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 OR2T33Q8NG76 320 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 RAB8BQ92930 207 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 PSMG2Q969U7 264 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 PRRC1Q96M27 445 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 OR6C1Q96RD1 312 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 TXN2Q99757 166 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 MRPL13Q9BYD1 178 aaKnown RBP8.42□□□□□ -1.06
CLIP1-214ENST00000540539 SRD5A3Q9H8P0 318 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 TM7SF3Q9NS93 570 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 FBXL17Q9UF56 701 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 SMPXQ9UHP9 88 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 TMED7Q9Y3B3 224 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 TRANK1O15050 2925 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 TRBV2A0A0J9YWF9 115 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 MYBPHLA2RUH7 354 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 C9orf172C9J069 976 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 LEFTY2O00292 366 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 P2RX6O15547 441 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 SPINT1O43278 529 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 NUDT21O43809 227 aaKnown RBP8.42□□□□□ -1.06
CLIP1-214ENST00000540539 JTBO76095 146 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 KLF8O95600 359 aaPredicted RBP8.42□□□□□ -1.06
CLIP1-214ENST00000540539 ADRA2CP18825 462 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 LGALS7P47929 136 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF880Q6PDB4 577 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF66Q6ZN08 573 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 HMGN2P46Q86SG4 172 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 TDHQ8IZJ6 230 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 D2HGDHQ8N465 521 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 EXD3Q8N9H8 876 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 TMEM229BQ8NBD8 167 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 CYB561A3Q8NBI2 242 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 APCDD1LQ8NCL9 501 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 MRGPRFQ96AM1 343 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 MS4A6EQ96DS6 147 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 FCRL2Q96LA5 508 aaPredicted RBP8.42□□□□□ -1.06
CLIP1-214ENST00000540539 LPAR4Q99677 370 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 NIPSNAP3BQ9BS92 247 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 SMDT1Q9H4I9 107 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 BPIFA1Q9NP55 256 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 A4GALTQ9NPC4 353 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 KLHL28Q9NXS3 571 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 IKZF2Q9UKS7 526 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 SCN8AQ9UQD0 1980 aa8.42□□□□□ -1.06
CLIP1-214ENST00000540539 CLEC18AA5D8T8 446 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 GPR89AB7ZAQ6 455 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CLDN34H7C241 214 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 FGF17O60258 216 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 YPEL1O60688 119 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 B4GALT2O60909 372 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 LEFTY1O75610 366 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 OR4Q2P0C623 313 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 GPR89BP0CG08 455 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 TMEM225BP0DP42 221 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 ZNF28P17035 718 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 HIST1H3AP68431 136 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 SSBP1Q04837 148 aaKnown RBP8.41□□□□□ -1.06
CLIP1-214ENST00000540539 SLAQ13239 276 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 ODF1Q14990 250 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 ELOCQ15369 112 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 PRR27Q6MZM9 219 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 BHLHA9Q7RTU4 235 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 NRMQ8IXM6 262 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 COX18Q8N8Q8 333 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CLEC18CQ8NCF0 446 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 ADAD2Q8NCV1 583 aaKnown RBP8.41□□□□□ -1.06
CLIP1-214ENST00000540539 MS4A10Q96PG2 267 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 YPEL2Q96QA6 119 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 CABLES2Q9BTV7 478 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 SMIM3Q9BZL3 60 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 PTPRDP23468 1912 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-214ENST00000540539 TSPAN11A1L157 253 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 EPPINO95925 133 aa8.41□□□□□ -1.06
CLIP1-214ENST00000540539 SRP19P09132 144 aaKnown RBP8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms