RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 RNF141Q8WVD5 230 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 IP6K3Q96PC2 410 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 AKIRIN1Q9H9L7 192 aaPredicted RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 CYTL1Q9NRR1 136 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 PCDHGA1Q9Y5H4 931 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 KLF2Q9Y5W3 355 aaPredicted RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 hCG_1809904A0A1W2PP81 198 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 A0A1W2PR64 198 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 A0A1W2PRV1 198 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 ZNF814B7Z6K7 855 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 NPIPA5E9PKD4 350 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 BCAT2O15382 392 aaPredicted RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 NDUFS6O75380 124 aaKnown RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 KLK2P20151 261 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 RAB6AP20340 208 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 PTGDSP41222 190 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 FHITP49789 147 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 ASCL1P50553 236 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 CEBPGP53567 150 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 TLE3Q04726 772 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 MFAP5Q13361 173 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 SMAD4Q13485 552 aaKnown RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 ANGPTL5Q86XS5 388 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 HIST2H2ABQ8IUE6 130 aaPredicted RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 OR4K15Q8NH41 348 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 POC1BQ8TC44 478 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 MITD1Q8WV92 249 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 C11orf40Q8WZ69 217 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 ADAT3Q96EY9 351 aaPredicted RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 FAM206AQ9NX38 181 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 NPIPA1Q9UND3 350 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 AMDHD2Q9Y303 409 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 IGLV3-12A0A075B6K2 115 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 LOC390937A0A1W2PQ73 354 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 LIPT2A6NK58 231 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 A6NLC8 198 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 SNAPINO95295 136 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 FABP1P07148 127 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 SLC25A4P12235 298 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 ZNF823P16415 610 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 PRSS12P56730 875 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 C17orf67Q0P5P2 114 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 HABP2Q14520 560 aaPredicted RBP11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 CLINT1Q14677 625 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 AWAT2Q6E213 333 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 ADAM5Q6NVV9 412 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 DNASE2BQ8WZ79 361 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 BCL2L14Q9BZR8 327 aa11.11□□□□□ -0.63
SFSWAP-208ENST00000539506 MYO7BQ6PIF6 2116 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 TRBV11-1A0A0K0K1C0 115 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 M0R036 132 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 GDF9O60383 454 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 C1QL1O75973 258 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 TTRP02766 147 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 FAM157CP0CG43 387 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 NQO2P16083 231 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 ITGA3P26006 1051 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 AFF3P51826 1226 aaKnown RBP11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 BIDP55957 195 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 ZNF260Q3ZCT1 412 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 C1orf100Q5SVJ3 147 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 DHRS7BQ6IAN0 325 aaPredicted RBP11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 ZNF813Q6ZN06 617 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 ZNF248Q8NDW4 579 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 RNF133Q8WVZ7 376 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 TMEM234Q8WY98 164 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 ST8SIA1Q92185 356 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 OR6C1Q96RD1 312 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 NRIP2Q9BQI9 281 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 CHST11Q9NPF2 352 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 FSCN3Q9NQT6 498 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 RNASEK-C17orf49H0YIS7 233 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 CD74P04233 296 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 OR8U9P0C7N5 309 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 VSIG8P0DPA2 414 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 MICBQ29980 383 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 ANKRD55Q3KP44 614 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 NKAIN1Q4KMZ8 207 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 SDK2Q58EX2 2172 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 FAM76BQ5HYJ3 339 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 OR8U1Q8NH10 309 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 C5orf34Q96MH7 638 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 NECAB3Q96P71 396 aaPredicted RBP11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 PRRT1Q99946 306 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 SULT4A1Q9BR01 284 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 PCED1AQ9H1Q7 454 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 SERINC1Q9NRX5 453 aa11.1□□□□□ -0.63
SFSWAP-208ENST00000539506 SSX5O60225 188 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 NME2P1O60361 137 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 RAMP1O60894 148 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 HEXBP07686 556 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 APOBEC1P41238 236 aaKnown RBP11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 CLDN6P56747 220 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 RIPPLY1Q0D2K3 151 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 FABP9Q0Z7S8 132 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 ZNF345Q14585 488 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 TOMM20Q15388 145 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 NCMAPQ5T1S8 102 aa11.09□□□□□ -0.63
SFSWAP-208ENST00000539506 CLEC18BQ6UXF7 455 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms