RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 COMMD4Q9H0A8 199 aa10.62□□□□□ -0.71
CLSTN3-208ENST00000538933 MOB1AQ9H8S9 216 aa10.62□□□□□ -0.71
CLSTN3-208ENST00000538933 IGHV1-18A0A0C4DH31 117 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 TRBV2A0A0J9YWF9 115 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 WNT9BO14905 357 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 MSMBP08118 114 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 CECR9P0C854 216 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 SMIM18P0DKX4 95 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 SLC2A1P11166 492 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 ZNF14P17017 642 aaPredicted RBP10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 DCTDP32321 178 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 RGS6P49758 472 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 ZNF121P58317 390 aaPredicted RBP10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 BDH1Q02338 343 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 MLLT11Q13015 90 aaPredicted RBP10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 ALKBH1Q13686 389 aaKnown RBP10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 TUSC1Q2TAM9 212 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 GFOD2Q3B7J2 385 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 C3orf36Q3SXR2 165 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 CCDC58Q4VC31 144 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 ARMCX4Q5H9R4 360 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 UBE2UQ5VVX9 321 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 RPL22L1Q6P5R6 122 aaKnown RBP10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 ZFP41Q8N8Y5 198 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 CLDND2Q8NHS1 167 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 UBASH3BQ8TF42 649 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 MGLLQ99685 303 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 SLC6A7Q99884 636 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 SUCNR1Q9BXA5 334 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 OR51B6Q9H340 312 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 OR52A1Q9UKL2 312 aa10.61□□□□□ -0.71
CLSTN3-208ENST00000538933 COL7A1Q02388 2944 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 LOC100509620A0A075B734 347 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 LOC105371242A0A075B767 164 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ACOD1A6NK06 481 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 INMTO95050 263 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 IGLV1-44P01699 117 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ACSM4P0C7M7 580 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 CELP19835 753 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ZFP36P26651 326 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 TGM4P49221 684 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 GTF2A1P52655 376 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 SLC3A1Q07837 685 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 MALLQ13021 153 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 TSTQ16762 297 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ODF4Q2M2E3 257 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ZNF684Q5T5D7 378 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ZNF584Q8IVC4 421 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ZNF676Q8N7Q3 588 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 OR52H1Q8NGJ2 320 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 OR5L1Q8NGL2 311 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 APOBEC3DQ96AK3 386 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 POM121L2Q96KW2 1035 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 C4orf45Q96LM5 186 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 PBOV1Q9GZY1 135 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 OR10A2Q9H208 303 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 LPAR2Q9HBW0 351 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ISYNA1Q9NPH2 558 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 G6PC2Q9NQR9 355 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 CRNNQ9UBG3 495 aaPredicted RBP10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 LSM2Q9Y333 95 aaKnown RBP10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 ARHGAP32A7KAX9 2087 aa10.6□□□□□ -0.71
CLSTN3-208ENST00000538933 A0A1B0GVI7 797 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 TMEM212A6NML5 194 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 FAM157BP0CG42 384 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 OTX1P32242 354 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 RAD52P43351 418 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 MMP16P51512 607 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 LMO4P61968 165 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 NAAAQ02083 359 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 HGFACQ04756 655 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 MFGE8Q08431 387 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 ACSM1Q08AH1 577 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 CDK5R1Q15078 307 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 WDR38Q5JTN6 314 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 LIPKQ5VXJ0 399 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 XAF1Q6GPH4 301 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 FAHD2BQ6P2I3 314 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 C1QL2Q7Z5L3 287 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 GPR141Q7Z602 305 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 CATSPERDQ86XM0 798 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 OR2G2Q8NGZ5 317 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 OR5AK2Q8NH90 309 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 ABHD4Q8TB40 342 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 MUL1Q969V5 352 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 FAHD2AQ96GK7 314 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 COG8Q96MW5 612 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 ZNF75AQ96N20 296 aa10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 UNKLQ9H9P5 680 aaKnown RBP10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 FBXO9Q9UK97 447 aaPredicted RBP10.59□□□□□ -0.71
CLSTN3-208ENST00000538933 TENM3Q9P273 2699 aa10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 IGHV2OR16-5A0A0B4J2B6 119 aa10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 TRIM64CA6NLI5 447 aa10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 E9PI62 339 aa10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 CCRL2O00421 344 aa10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 XRCC2O43543 280 aa10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 PNPP00491 289 aa10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 LALBAP00709 142 aa10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 UBCP0CG48 685 aaKnown RBP10.58□□□□□ -0.72
CLSTN3-208ENST00000538933 JUNBP17275 347 aaPredicted RBP10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms