RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 ZNF230Q9UIE0 474 aaPredicted RBP9.46□□□□□ -0.89
CLIP1-210ENST00000538120 HHLA2Q9UM44 414 aa9.46□□□□□ -0.89
CLIP1-210ENST00000538120 HMSDA8MTL9 139 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 SMPD2O60906 423 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 RBBP9O75884 186 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 TNFSF15O95150 251 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 VAMP5O95183 116 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 CNR1P21554 472 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 ANOS1P23352 680 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 CLDN15P56746 228 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 RBMS2Q15434 407 aaKnown RBP9.46□□□□□ -0.9
CLIP1-210ENST00000538120 PIP4P1Q86T03 277 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 LYPD6Q86Y78 171 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 OR51A2Q8NGJ7 313 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 OR14L1PQ8NHC6 308 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 MARC2Q969Z3 335 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 MRPS24Q96EL2 167 aaKnown RBP9.46□□□□□ -0.9
CLIP1-210ENST00000538120 ADGRG7Q96K78 797 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 PBOV1Q9GZY1 135 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 LDAHQ9H6V9 325 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 PARD6AQ9NPB6 346 aa9.46□□□□□ -0.9
CLIP1-210ENST00000538120 UBE2QL1A1L167 161 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 H7C417 338 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 RER1O15258 196 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 NEURL1O76050 574 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 CD3DP04234 171 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 CALCRP30988 508 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 MNDAP41218 407 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 SUCLG1P53597 346 aaKnown RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 SCAND1P57086 179 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 MRPS10P82664 201 aaKnown RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 AARDQ4LEZ3 155 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 WIPI1Q5MNZ9 446 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 C10orf128Q5T292 105 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 TMEM244Q5VVB8 128 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 SHEQ5VZ18 495 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 DNM1P46Q6ZS02 220 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 FOXL2NBQ6ZUU3 175 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 CDH26Q8IXH8 852 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 PDZD9Q8IXQ8 264 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 OR5M9Q8NGP3 310 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 OR13C3Q8NGS6 347 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 TNFAIP8L1Q8WVP5 186 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 ASH2LQ9UBL3 628 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 MTFP1Q9UDX5 166 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 MRPS18CQ9Y3D5 142 aaKnown RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 RHBDD3Q9Y3P4 386 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 FREM2Q5SZK8 3169 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 SLC17A2O00624 439 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 XRCC3O43542 346 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 TLX3O43711 291 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 WDPCPO95876 746 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 PLATP00750 562 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 UBCP0CG48 685 aaKnown RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 GTF2F2P13984 249 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 NTF4P34130 210 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 CSNK1A1P48729 337 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 STARP49675 285 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 RAC3P60763 192 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 S100A12P80511 92 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 TRIP6Q15654 476 aaKnown RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 C2orf76Q3KRA6 126 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 JMJD6Q6NYC1 403 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 C11orf88Q6PI97 169 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 RHOUQ7L0Q8 258 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 KCNE4Q8WWG9 221 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 NABP1Q96AH0 204 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 SIGLEC12Q96PQ1 595 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 MFFQ9GZY8 342 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 LRFN1Q9P244 771 aa9.45□□□□□ -0.9
CLIP1-210ENST00000538120 FOXD3Q9UJU5 478 aaPredicted RBP9.45□□□□□ -0.9
CLIP1-210ENST00000538120 TRAV18A0A075B6X5 111 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 A0A1B0GTI1 187 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 A0A1W2PPH5 198 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 A6NLC8 198 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 GJE1A6NN92 205 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 ZNF878C9JN71 531 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 NPIPA2E9PIF3 369 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 NPIPA3F8WFD2 350 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 TXNL1O43396 289 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 DNPH1O43598 174 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 CTAG2O75638 210 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 CD2P06729 351 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 MPGP29372 298 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 RAB11BQ15907 218 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 DCAF10Q5QP82 559 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 KLHL24Q6TFL4 600 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 BEND4Q6ZU67 534 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 ZNF295-AS1Q8N0V1 137 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 OR6N1Q8NGY5 312 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 OR2AJ1Q8NGZ0 328 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 ZNF416Q9BWM5 594 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 WDR13Q9H1Z4 485 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 ZNF319Q9P2F9 582 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 POLR1DQ9Y2S0 133 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 NCKAP5O14513 1909 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 TRAV14DV4A0A0A6YYC5 116 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 GGT3PA6NGU5 568 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 PCP4L1A6NKN8 68 aa9.44□□□□□ -0.9
CLIP1-210ENST00000538120 FAM74A7A6NL05 159 aa9.44□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms