RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 IDSB3KWA1 339 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 TBC1D3LB9A6J9 549 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 EEF1E1-BLOC1S5C9J1V9 151 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 K7EQS6 105 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 SYT7O43581 403 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 NARSO43776 548 aaKnown RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 ICOSLGO75144 302 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CLN5O75503 358 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 STK17BO94768 372 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 RPP14O95059 124 aaKnown RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 LYPD3O95274 346 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 IFNA21P01568 189 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 IL6RP08887 468 aaPredicted RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 HOXC4P09017 264 aaPredicted RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 HOXB5P09067 269 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 NPSP0C0P6 89 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 SLC35G6P0C7Q6 338 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 C8orf89P0DMQ9 161 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 TMEM225BP0DP42 221 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CLUP10909 449 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 NQO2P16083 231 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CBR1P16152 277 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 FUT1P19526 365 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 NFYBP25208 207 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 NTSR1P30989 418 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CD80P33681 288 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 DNASE1L1P49184 302 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 P2RY4P51582 365 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 TIRAPP58753 221 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 SPCS3P61009 180 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 ACTR1AP61163 376 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 RPS15AP62244 130 aaKnown RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 RAP1AP62834 184 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 FAM3AP98173 230 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 FOXO1Q12778 655 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 KIAA0141Q14154 515 aaPredicted RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 TMEM128Q5BJH2 165 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 LRRC73Q5JTD7 316 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 ZNF684Q5T5D7 378 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 TBC1D3CQ6IPX1 549 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 LEG1Q6P5S2 330 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 SLC22A25Q6T423 547 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 RBMS3Q6XE24 437 aaKnown RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 OLIG3Q7RTU3 272 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 TBC1D3Q8IZP1 549 aaPredicted RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 C11orf44Q8N8P7 122 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 SLC16A11Q8NCK7 471 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 NPEPL1Q8NDH3 523 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 C7orf57Q8NEG2 295 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 GRHL3Q8TE85 626 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 ZFPM2Q8WW38 1151 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 LCN9Q8WX39 176 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 FAM3CQ92520 227 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 MCHR2Q969V1 340 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 RAB7BQ96AH8 199 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 SLC22A18Q96BI1 424 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CPNE2Q96FN4 548 aaPredicted RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 SLC41A2Q96JW4 573 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 C2orf50Q96LR7 162 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 NOL4LQ96MY1 436 aaPredicted RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 ZNF681Q96N22 645 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CLCC1Q96S66 551 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 NMNAT2Q9BZQ4 307 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CHST6Q9GZX3 395 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 METTL8Q9H825 291 aaKnown RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 PLEKHA2Q9HB19 425 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 IL21RQ9HBE5 538 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 SIRT7Q9NRC8 400 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 GRHPRQ9UBQ7 328 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 CACFD1Q9UGQ2 172 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 ZNF230Q9UIE0 474 aaPredicted RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 MMP17Q9ULZ9 603 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 MRPS33Q9Y291 106 aaKnown RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 NTNG1Q9Y2I2 539 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 PCDHGA1Q9Y5H4 931 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 PCYT1BQ9Y5K3 369 aaPredicted RBP5.83□□□□□ -1.48
USP28-202ENST00000535607 MYOFQ9NZM1 2061 aa5.83□□□□□ -1.48
USP28-202ENST00000535607 TCF20Q9UGU0 1960 aaKnown RBP5.82□□□□□ -1.48
USP28-202ENST00000535607 A0A1B0GW64 132 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 A0A1B0GWA3 101 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 BTBD17A6NE02 478 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 OR4C45A6NMZ5 311 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.82□□□□□ -1.48
USP28-202ENST00000535607 ZNF587BE7ETH6 402 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 PPP1R2P9O14990 202 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 SIGLEC5O15389 551 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 DOK2O60496 412 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 OR2C1O95371 312 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 TBX6O95947 436 aaPredicted RBP5.82□□□□□ -1.48
USP28-202ENST00000535607 ERCC1P07992 297 aaPredicted RBP5.82□□□□□ -1.48
USP28-202ENST00000535607 SNRNP70P08621 437 aaKnown RBP5.82□□□□□ -1.48
USP28-202ENST00000535607 FCGR3AP08637 254 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 SPARCP09486 303 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 FAM157CP0CG43 387 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 C6P13671 934 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 CPMP14384 443 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 HOXB2P14652 356 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 AKR1C4P17516 323 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 ADRA2CP18825 462 aa5.82□□□□□ -1.48
USP28-202ENST00000535607 ITGA3P26006 1051 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms