RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 PGAM5Q96HS1 289 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 PGLYRP3Q96LB9 341 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 TTTY10Q9BZA0 68 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 OPA3Q9H6K4 179 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 NDUFB11Q9NX14 153 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 ZNF319Q9P2F9 582 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 HHLA2Q9UM44 414 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 SLC22A13Q9Y226 551 aa6.37□□□□□ -1.39
CD44-228ENST00000528455 IGHV2OR16-5A0A0B4J2B6 119 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 A0A1B0GTI1 187 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 DHRS7CA6NNS2 312 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 H3BSA7 217 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 ZNF561-AS1K7EIQ3 104 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 M0R1B8 84 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 SC5DO75845 299 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 GATBO75879 557 aaKnown RBP6.36□□□□□ -1.39
CD44-228ENST00000528455 GOSR1O95249 250 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 NGFP01138 241 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 CELA3BP08861 270 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 CECR9P0C854 216 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 CCL2P13500 99 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 IGFBP2P18065 325 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 CCL1P22362 96 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 SSTR2P30874 369 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 CCKARP32238 428 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 GLRXP35754 106 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 WNT5AP41221 380 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 CRYBB2P43320 205 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 KIR3DL2P43630 455 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 SLC6A9P48067 706 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 ZNF83P51522 516 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 TMBIM6P55061 237 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 SLC3A1Q07837 685 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 MFGE8Q08431 387 aaPredicted RBP6.36□□□□□ -1.39
CD44-228ENST00000528455 SSX1Q16384 188 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 TIMM50Q3ZCQ8 353 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 ACSM3Q53FZ2 586 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 BEX5Q5H9J7 111 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 NCMAPQ5T1S8 102 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 FBXW12Q6X9E4 464 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 MEX3BQ6ZN04 569 aaKnown RBP6.36□□□□□ -1.39
CD44-228ENST00000528455 DOK3Q7L591 496 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 ANKRD13BQ86YJ7 626 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 LURAP1LQ8IV03 231 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 ZNF676Q8N7Q3 588 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 OR8B12Q8NGG6 310 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 ZNF420Q8TAQ5 688 aaPredicted RBP6.36□□□□□ -1.39
CD44-228ENST00000528455 AKAP1Q92667 903 aaKnown RBP eCLIP6.36□□□□□ -1.39
CD44-228ENST00000528455 HAVCR1Q96D42 359 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 DGCR14Q96DF8 476 aaKnown RBP6.36□□□□□ -1.39
CD44-228ENST00000528455 KCNS3Q9BQ31 491 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 PDCD1LG2Q9BQ51 273 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 BCL7BQ9BQE9 202 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 FUNDC2Q9BWH2 189 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 NPAP1Q9NZP6 1156 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 SSR3Q9UNL2 185 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 GSTK1Q9Y2Q3 226 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 FBN2P35556 2912 aa6.36□□□□□ -1.39
CD44-228ENST00000528455 PDZD2O15018 2839 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 TRBV5-5A0A0J9YX44 114 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 SMIM31A0A1B0GVY4 71 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 DPPA5A6NC42 116 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 ZNF879B4DU55 563 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 ZNF701M0R085 212 aaPredicted RBP6.35□□□□□ -1.39
CD44-228ENST00000528455 SYT7O43581 403 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 GPX5O75715 221 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 SLC2A1P11166 492 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 ZNF250P15622 560 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 SELEP16581 610 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 ACHEP22303 614 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 MAPK3P27361 379 aaPredicted RBP6.35□□□□□ -1.39
CD44-228ENST00000528455 TGFBR2P37173 567 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 PPP1CBP62140 327 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 RPS11P62280 158 aaKnown RBP eCLIP6.35□□□□□ -1.39
CD44-228ENST00000528455 NKX6-1P78426 367 aaPredicted RBP6.35□□□□□ -1.39
CD44-228ENST00000528455 FAM3AP98173 230 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 ZNF92Q03936 586 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 HGFACQ04756 655 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 BSPH1Q075Z2 132 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 MOGQ16653 247 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 SNAI3Q3KNW1 292 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 ZNF718Q3SXZ3 478 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 Q499Y3 187 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 TM4SF20Q53R12 229 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 TMEM91Q6ZNR0 172 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 CEACAM19Q7Z692 300 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 MYPOPQ86VE0 399 aaPredicted RBP6.35□□□□□ -1.39
CD44-228ENST00000528455 SATL1Q86VE3 508 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 SERPINA12Q8IW75 414 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 ZNF101Q8IZC7 436 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 RDH10Q8IZV5 341 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 PAQR4Q8N4S7 273 aaPredicted RBP6.35□□□□□ -1.39
CD44-228ENST00000528455 ZFP41Q8N8Y5 198 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 NUP37Q8NFH4 326 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 OR5D14Q8NGL3 314 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 OR1J1Q8NGS3 322 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 OR14K1Q8NGZ2 314 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 OR51E1Q8TCB6 317 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 C14orf79Q96F83 325 aa6.35□□□□□ -1.39
CD44-228ENST00000528455 MARS2Q96GW9 593 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms