RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 FADS1O60427 444 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 STX10O60499 249 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 SHOX2O60902 331 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 CLDN11O75508 207 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 TRAPPC6AO75865 159 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 GLSO94925 669 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 OXTP01178 125 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 IGKV3-20P01619 116 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 HBE1P02100 147 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 CALB1P05937 261 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 LOXP28300 417 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 FCGR2CP31995 323 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 TMEM33P57088 247 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 FBXW4P57775 412 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 TAS2R60P59551 318 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 HILS1P60008 231 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 RANP62826 216 aaKnown RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 DEFB103AP81534 67 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 ZNF33BQ06732 778 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 ELAVL2Q12926 359 aaKnown RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 AQP6Q13520 282 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 RAB31Q13636 194 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 KIAA0141Q14154 515 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 ABRAXAS2Q15018 415 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 PON3Q15166 354 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 RAB35Q15286 201 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 TAF1AQ15573 450 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 MLF2Q15773 248 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 IL17AQ16552 155 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 DCST2Q5T1A1 773 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 HACD4Q5VWC8 232 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 FRMPD2BQ6IN97 320 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 STAC2Q6ZMT1 411 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 MRPL52Q86TS9 123 aaKnown RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 RALGPS2Q86X27 583 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 CATSPER3Q86XQ3 398 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 PUSL1Q8N0Z8 303 aaKnown RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 KIR2DL5AQ8N109 375 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 DEFB123Q8N688 67 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 METTL13Q8N6R0 699 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 ATP6V0D2Q8N8Y2 350 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 PXT1Q8NFP0 134 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 OR5L1Q8NGL2 311 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 OR51A7Q8NH64 312 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 KIR2DL5BQ8NHK3 375 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 SYNPRQ8TBG9 265 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 UFD1Q92890 307 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 CREB3L1Q96BA8 519 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 RMND5BQ96G75 393 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 HBEGFQ99075 208 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 ULBP1Q9BZM6 244 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 TRIM4Q9C037 500 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 FAM107BQ9H098 131 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 PARLQ9H300 379 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 MFSD1Q9H3U5 465 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 TRABDQ9H4I3 376 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 DHX35Q9H5Z1 703 aaKnown RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 REEP4Q9H6H4 257 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 NMUR1Q9HB89 426 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 EML4Q9HC35 981 aaKnown RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 ABCB9Q9NP78 766 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 IL1RAPQ9NPH3 570 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 IFT46Q9NQC8 304 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 SLC2A9Q9NRM0 540 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 TEX10Q9NXF1 929 aaPredicted RBP3.83□□□□□ -1.8
CD44-220ENST00000525688 TMEM9Q9P0T7 183 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 PRODH2Q9UF12 536 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 SMPXQ9UHP9 88 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 SNX24Q9Y343 169 aa3.83□□□□□ -1.8
CD44-220ENST00000525688 SPTBN5Q9NRC6 3674 aaKnown RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 A0A087WWV3 80 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 A0A0B4J2E0 115 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 A0A1B0GTH9 108 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 A0A1B0GX12 115 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 VPS37CA5D8V6 355 aaPredicted RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 OR5B21A6NL26 309 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 EFCAB7A8K855 629 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 IDSB3KWA1 339 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 TRDCB7Z8K6 153 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 C21orf140B9A014 251 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 H7C0C1 242 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 CCRL2O00421 344 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 NDUFA2O43678 99 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 SOX15O60248 233 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 CTNSO60931 367 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 LYPD3O95274 346 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 RAB36O95755 333 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 HPP00738 406 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 CATP04040 527 aaKnown RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 ZSCAN5DPP0CG00 497 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 COX5AP20674 150 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 CD52P31358 61 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 SAA4P35542 130 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 MAGEA12P43365 314 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 OMPP47874 163 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 AP2S1P53680 142 aaPredicted RBP3.82□□□□□ -1.8
CD44-220ENST00000525688 OR4D2P58180 307 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 RHOAP61586 193 aa3.82□□□□□ -1.8
CD44-220ENST00000525688 RPS14P62263 151 aaKnown RBP3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms