RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 EXD2Q9NVH0 621 aa5.33□□□□□ -1.56
LSM1-202ENST00000520286 HMGXB4Q9UGU5 601 aa5.33□□□□□ -1.56
LSM1-202ENST00000520286 LOC285556D6RIA3 1793 aa5.33□□□□□ -1.56
LSM1-202ENST00000520286 IGKV3D-20A0A0C4DH25 116 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 A0A0G2JMP0 313 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 FAM25AB3EWG3 89 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 FAM25CB3EWG5 89 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 FAM25GB3EWG6 89 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 hCG_2039718K7EN88 272 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 L7N2F9 121 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 SLC9A3R1O14745 358 aaPredicted RBP5.32□□□□□ -1.56
LSM1-202ENST00000520286 HTR1AP08908 422 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 GABRR1P24046 479 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 GCLMP48507 274 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 PSME3P61289 254 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 LIPEQ05469 1076 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 GPNMBQ14956 572 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 NEDD8Q15843 81 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 UBE2UQ5VVX9 321 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 C22orf42Q6IC83 251 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 FAM45BPQ6NSW5 357 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 REEP3Q6NUK4 255 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 ZNF544Q6NX49 715 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 RFLNAQ6ZTI6 216 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 C10orf107Q8IVU9 208 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 LIX1Q8N485 282 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 CBR4Q8N4T8 237 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 FBXL13Q8NEE6 735 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 FANK1Q8TC84 345 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 FAM45AQ8TCE6 357 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 RPUSD4Q96CM3 377 aaKnown RBP5.32□□□□□ -1.56
LSM1-202ENST00000520286 C20orf96Q9NUD7 363 aaPredicted RBP5.32□□□□□ -1.56
LSM1-202ENST00000520286 LYARQ9NX58 379 aaKnown RBP5.32□□□□□ -1.56
LSM1-202ENST00000520286 RBAKQ9NYW8 714 aaPredicted RBP5.32□□□□□ -1.56
LSM1-202ENST00000520286 PDP1Q9P0J1 537 aaPredicted RBP5.32□□□□□ -1.56
LSM1-202ENST00000520286 TBC1D24Q9ULP9 559 aa5.32□□□□□ -1.56
LSM1-202ENST00000520286 NOSIPQ9Y314 301 aaKnown RBP5.32□□□□□ -1.56
LSM1-202ENST00000520286 PRRC2BQ5JSZ5 2229 aaKnown RBP5.32□□□□□ -1.56
LSM1-202ENST00000520286 DOCK1Q14185 1865 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 A0A0G2JLM5 398 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 A0A0X1KG70 313 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 C12orf71A8MTZ7 269 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 FAM25EA8MYX2 175 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 SUPT3HB4E1H0 165 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 APOC4-APOC2K7ER74 178 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 HDAC3O15379 428 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 MMP23AO75900 390 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 CCNE2O96020 404 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 APOC2P02655 101 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 SPNP16150 400 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 CFL1P23528 166 aaKnown RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 CRHBPP24387 322 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 BTCP35070 178 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 SERPINB5P36952 375 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 GPR6P46095 362 aaPredicted RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 UQCRFS1P47985 274 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 SERPINB10P48595 397 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 SLC25A11Q02978 314 aaKnown RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 INCA1Q0VD86 236 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 ART3Q13508 389 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 KRR1Q13601 381 aaKnown RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 NSDHLQ15738 373 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 RSBN1Q5VWQ0 802 aaPredicted RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 LCN8Q6JVE9 175 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 CNIH2Q6PI25 160 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 SCARA5Q6ZMJ2 495 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 SNX29P2Q8IUI4 249 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 DAW1Q8N136 415 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 OR10Z1Q8NGY1 313 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 LHFPL5Q8TAF8 219 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 RHEBL1Q8TAI7 183 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 CXorf40AQ8TE69 158 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 CDKL2Q92772 493 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 YIPF6Q96EC8 236 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 MED8Q96G25 268 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 CENPNQ96H22 339 aaPredicted RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 CALN1Q9BXU9 219 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 ROGDIQ9GZN7 287 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 SLIRPQ9GZT3 109 aaKnown RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 IL22Q9GZX6 179 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 NXF2Q9GZY0 626 aaKnown RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 DSN1Q9H410 356 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 CWH43Q9H720 699 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 MRM3Q9HC36 420 aaKnown RBP5.31□□□□□ -1.56
LSM1-202ENST00000520286 C12orf4Q9NQ89 552 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 GPATCH2LQ9NWQ4 482 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 FBXL12Q9NXK8 326 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 ZNF229Q9UJW7 825 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 FBXO5Q9UKT4 447 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 CFL2Q9Y281 166 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 Q9Y3F1 56 aa5.31□□□□□ -1.56
LSM1-202ENST00000520286 PLXNA1Q9UIW2 1896 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 PRORSD1PA6NEY8 169 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 TEX46H3BTG2 121 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 SIRPB1O00241 398 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 ZBTB5O15062 677 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 CCNKO75909 580 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 ZBTB25P24278 435 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 ETV6P41212 452 aa5.3□□□□□ -1.56
LSM1-202ENST00000520286 NBL1P41271 181 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms