RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 FGF18O76093 207 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 HEXAP06865 529 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 MELTFP08582 738 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 SEC11BP0C7V7 166 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 TMEM11P17152 192 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 RPS4Y1P22090 263 aaKnown RBP10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 ERVFRD-1P60508 538 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 LINC00518Q8N0U6 118 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 OR52N5Q8NH56 324 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 RPS4Y2Q8TD47 263 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 ZNF384Q8TF68 577 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 ARRDC3Q96B67 414 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 PIPOXQ9P0Z9 390 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 COA3Q9Y2R0 106 aaPredicted RBP10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 CCR2P41597 374 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 OR1C1Q15619 314 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 SNX22Q96L94 193 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 OR2V2Q96R30 315 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 OR4C12Q96R67 309 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 DUSP23Q9BVJ7 150 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 CHST11Q9NPF2 352 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 USP22Q9UPT9 525 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 KIDINS220Q9ULH0 1771 aa10.17□□□□□ -0.78
LIMCH1-217ENST00000512946 UBE2L5PA0A1B0GUS4 154 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 TCRBV21S2A2A0A5A6 115 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 PQLC2LA1A4F0 135 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 CER1O95813 267 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 HOXB1P14653 301 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 SPNP16150 400 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 PNLIPRP2P54317 469 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 YPEL5P62699 121 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 RPL11P62913 178 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 HNRNPA1L2Q32P51 320 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 FAM209AQ5JX71 171 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 ACSM5Q6NUN0 579 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 CA2P00918 260 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 PRSS56P0CW18 603 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 FAM109BQ6ICB4 259 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 C11orf40Q8WZ69 217 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 RNF167Q9H6Y7 350 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 SH2D2AQ9NP31 389 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 HSFX1Q9UBD0 423 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 C19orf53Q9UNZ5 99 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 KIF1AQ12756 1690 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 CXorf65A6NEN9 183 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 HSPB6O14558 160 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 SMPD2O60906 423 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 OR2J2O76002 312 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 PLPPR5Q32ZL2 321 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 SPRYD7Q5W111 196 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 JMJD6Q6NYC1 403 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 FAM169BQ8N8A8 192 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 STXBP6Q8NFX7 210 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 ST8SIA1Q92185 356 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 UBTD1Q9HAC8 227 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 IGKV6-21A0A0C4DH24 114 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 C9orf170A2RU37 121 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 SDCBPO00560 298 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 HCRTO43612 131 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 GPANK1O95872 356 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 FGF2P09038 288 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 ST6GAL1P15907 406 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 SRP14P37108 136 aaKnown RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 SSR4P51571 173 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 FUT6P51993 359 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 PPP1CAP62136 330 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 ARG2P78540 354 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 RUNX3Q13761 415 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 GPRIN1Q7Z2K8 1008 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 TSACCQ96A04 125 aaPredicted RBP10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 NAGKQ9UJ70 344 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 AMDHD2Q9Y303 409 aa10.16□□□□□ -0.78
LIMCH1-217ENST00000512946 CBR3O75828 277 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 FUT3P21217 361 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 C1orf61Q13536 156 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 ZNF273Q14593 569 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 SHBQ15464 509 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 OR8B8Q15620 311 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 VMA21Q3ZAQ7 101 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 LAIR1Q6GTX8 287 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 DEGS2Q6QHC5 323 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 OSR2Q8N2R0 312 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 GOT1L1Q8NHS2 421 aaPredicted RBP10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 ULBP3Q9BZM4 244 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 ZNF716A6NP11 495 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 NXPH3O95157 252 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 EPHA2P29317 976 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 CHRNA7P36544 502 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 WDFY1Q8IWB7 410 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 MYOZ3Q8TDC0 251 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 UBE2FQ969M7 185 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 MRPS24Q96EL2 167 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 TIMD4Q96H15 378 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 FOXN4Q96NZ1 517 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 SIGLEC11Q96RL6 698 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 TECRQ9NZ01 308 aaKnown RBP10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 FBXL17Q9UF56 701 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 E9PCH4 1651 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 OR2W5A6NFC9 320 aa10.15□□□□□ -0.78
LIMCH1-217ENST00000512946 H0YGG7 62 aa10.15□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms