RNA–Protein interactions for RNA: ENST00000504173.1

NUP54-203, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 314 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-203ENST00000504173 TRBV2A0A0J9YWF9 115 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 LOC107986453A0A1B0GWG9 222 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 ZSCAN5BA6NJL1 495 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 TMEM212A6NML5 194 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 OR4C45A6NMZ5 311 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 ANKRD30BLA7E2S9 258 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 H3BSH0 61 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 H7C417 338 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 OVOL3O00110 214 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 SMAD7O15105 426 aaKnown RBP8.54□□□□□ -1.04
NUP54-203ENST00000504173 SYT7O43581 403 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 SPRY3O43610 288 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 MRPS14O60783 128 aaKnown RBP8.54□□□□□ -1.04
NUP54-203ENST00000504173 LILRA1O75019 489 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 DHRS3O75911 302 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 LALBAP00709 142 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 IGLV3-1P01715 115 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 ERCC1P07992 297 aaPredicted RBP8.54□□□□□ -1.04
NUP54-203ENST00000504173 ATP6V1B1P15313 513 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 DDOSTP39656 456 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 MAP2K4P45985 399 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 MAP2K3P46734 347 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 MMP15P51511 669 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 CDH15P55291 814 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 TAS2R43P59537 309 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 CDK5R1Q15078 307 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 OR8B8Q15620 311 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 TBCEQ15813 527 aaPredicted RBP8.54□□□□□ -1.04
NUP54-203ENST00000504173 KCTD21Q4G0X4 260 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 XAF1Q6GPH4 301 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 PRSS57Q6UWY2 283 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 DOK3Q7L591 496 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 RDH10Q8IZV5 341 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 LRRC75A-AS1Q8N1F1 130 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 ZCCHC24Q8N2G6 241 aaKnown RBP8.54□□□□□ -1.04
NUP54-203ENST00000504173 SVOPQ8N4V2 548 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 ZNF676Q8N7Q3 588 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 ZFP41Q8N8Y5 198 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 ZNF485Q8NCK3 441 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 CSNK2A3Q8NEV1 391 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 SEMA6DQ8NFY4 1073 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 OR5AK2Q8NH90 309 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 TRMT61AQ96FX7 289 aaKnown RBP8.54□□□□□ -1.04
NUP54-203ENST00000504173 SOX7Q9BT81 388 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 COMMD4Q9H0A8 199 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 RAB1BQ9H0U4 201 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 TMEM100Q9NV29 134 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 MRPL15Q9P015 296 aaKnown RBP8.54□□□□□ -1.04
NUP54-203ENST00000504173 ARFGEF3Q5TH69 2177 aa8.54□□□□□ -1.04
NUP54-203ENST00000504173 A0A0G2JK05 382 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 A0A1B0GTI1 187 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 PNMA8CA0A1B0GUJ8 204 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 LOC390937A0A1W2PQ73 354 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 C17orf100A8MU93 164 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 OGG1O15527 345 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 TNFAIP8O95379 198 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ZNF12P17014 697 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ACHEP22303 614 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 CCL1P22362 96 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 CA6P23280 308 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 TNFSF4P23510 183 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ACKR3P25106 362 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 PTH2RP49190 550 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ATP5J2P56134 94 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 SLC3A1Q07837 685 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 RIPPLY1Q0D2K3 151 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 SPHARQ15513 63 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 TSTQ16762 297 aaKnown RBP8.53□□□□□ -1.04
NUP54-203ENST00000504173 KRTAP24-1Q3LI83 254 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ZNF773Q6PK81 442 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 Q6ZR03 302 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 FTMTQ8N4E7 242 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 CCDC54Q8NEL0 328 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 OR2Z1Q8NG97 314 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 OR10AD1Q8NGE0 317 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 OR14K1Q8NGZ2 314 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 OR13G1Q8NGZ3 307 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ITFG2Q969R8 447 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ELMOD3Q96FG2 381 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 PERPQ96FX8 193 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 SORCS2Q96PQ0 1159 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 OR5M11Q96RB7 305 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 DIRC2Q96SL1 478 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 PDCD1LG2Q9BQ51 273 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 SLC30A2Q9BRI3 323 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ADAT1Q9BUB4 502 aaKnown RBP8.53□□□□□ -1.04
NUP54-203ENST00000504173 PAPOLGQ9BWT3 736 aaKnown RBP8.53□□□□□ -1.04
NUP54-203ENST00000504173 SLC22A4Q9H015 551 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 PLEKHA1Q9HB21 404 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ZNF701Q9NV72 531 aaPredicted RBP8.53□□□□□ -1.04
NUP54-203ENST00000504173 ENPP5Q9UJA9 477 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ZDHHC8Q9ULC8 765 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 HHLA2Q9UM44 414 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 PIGLQ9Y2B2 252 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 LSM2Q9Y333 95 aaKnown RBP8.53□□□□□ -1.04
NUP54-203ENST00000504173 NOP16Q9Y3C1 178 aaKnown RBP8.53□□□□□ -1.04
NUP54-203ENST00000504173 SIRT4Q9Y6E7 314 aaPredicted RBP8.53□□□□□ -1.04
NUP54-203ENST00000504173 V9GYS6 101 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 USF3Q68DE3 2245 aa8.53□□□□□ -1.04
NUP54-203ENST00000504173 ZNF816-ZNF321PA0A0X1KG74 233 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms