RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 TMPRSS13Q9BYE2 586 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 CHST5Q9GZS9 411 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 LPAR5Q9H1C0 372 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 OR10A2Q9H208 303 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 OR10A4Q9H209 315 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 KCNK15Q9H427 330 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 RGCCQ9H4X1 137 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 FLVCR2Q9UPI3 526 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 TIMM10BQ9Y5J6 103 aa9.41□□□□□ -0.9
USP4-214ENST00000491791 CACNA1CQ13936 2221 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 MGAQ8IWI9 3026 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 IGKV1-9A0A0C4DH69 117 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 OR14I1A6ND48 311 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 CEACAM18A8MTB9 384 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 FOXI3A8MTJ6 420 aaPredicted RBP9.4□□□□□ -0.9
USP4-214ENST00000491791 E9PLN8 166 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 G3V3Q6 166 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 PYCARD-AS1I3L0S3 204 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 J3QKU1 62 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 M0R135 149 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 KLK10O43240 276 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 ZNF780AO75290 641 aaPredicted RBP9.4□□□□□ -0.9
USP4-214ENST00000491791 RGS11O94810 467 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 CD3DP04234 171 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 ABOP16442 354 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 ZNF708P17019 499 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 S100A1P23297 94 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 CLDN18P56856 261 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 RAP2BP61225 183 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 OC90Q02509 493 aaPredicted RBP9.4□□□□□ -0.9
USP4-214ENST00000491791 ARL6IP1Q15041 203 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 MOGAT2Q3SYC2 334 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 WIPI1Q5MNZ9 446 aaPredicted RBP9.4□□□□□ -0.9
USP4-214ENST00000491791 ZBTB37Q5TC79 503 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 TMEM42Q69YG0 159 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 ASCL4Q6XD76 172 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 Q6ZTK2 550 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 OR10R2Q8NGX6 335 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 OR1F12Q8NHA8 337 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 NKD1Q969G9 470 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 SPSB1Q96BD6 273 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 ZNF799Q96GE5 643 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 MS4A3Q96HJ5 214 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 SIGLEC12Q96PQ1 595 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 TM2D1Q9BX74 207 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 BCO1Q9HAY6 547 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 GPR35Q9HC97 309 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 GP6Q9HCN6 339 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 ACKR4Q9NPB9 350 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 PLSCR3Q9NRY6 295 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 PARPBPQ9NWS1 579 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 PIPOXQ9P0Z9 390 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 MRPS28Q9Y2Q9 187 aaKnown RBP9.4□□□□□ -0.9
USP4-214ENST00000491791 NCKAP5O14513 1909 aa9.4□□□□□ -0.9
USP4-214ENST00000491791 OR5H15A6NDH6 313 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 ZNF736B4DX44 427 aaPredicted RBP9.39□□□□□ -0.91
USP4-214ENST00000491791 SGCEO43556 437 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 SSNA1O43805 119 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 NME2P1O60361 137 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 TNFSF15O95150 251 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 RAB3DO95716 219 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 ACTL6AO96019 429 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 CYB5AP00167 134 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 VSIG10L2P0DP72 767 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 NME2P22392 152 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 ANOS1P23352 680 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 CBX5P45973 191 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 SRSF4Q08170 494 aaKnown RBP9.39□□□□□ -0.91
USP4-214ENST00000491791 PPA1Q15181 289 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 OR1C1Q15619 314 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 CDNFQ49AH0 187 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 NSUN5P2Q63ZY6 315 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 RTL6Q6ICC9 239 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 SPINK14Q6IE38 97 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 OR10K2Q6IF99 312 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 FAHD2BQ6P2I3 314 aaPredicted RBP9.39□□□□□ -0.91
USP4-214ENST00000491791 NAA40Q86UY6 237 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 SULF2Q8IWU5 870 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 ZFP62Q8NB50 900 aaPredicted RBP9.39□□□□□ -0.91
USP4-214ENST00000491791 UXS1Q8NBZ7 420 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 OR56B1Q8NGI3 324 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 OR4D10Q8NGI6 311 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 OR51S1Q8NGJ8 323 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 CCDC107Q8WV48 283 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 SPSB4Q96A44 273 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 SGK3Q96BR1 496 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 ZNF837Q96EG3 531 aaPredicted RBP9.39□□□□□ -0.91
USP4-214ENST00000491791 FAHD2AQ96GK7 314 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 PRRT1Q99946 306 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 OCSTAMPQ9BR26 566 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 GINS4Q9BRT9 223 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 SOX7Q9BT81 388 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 NKIRAS2Q9NYR9 191 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 KLF13Q9Y2Y9 288 aaPredicted RBP9.39□□□□□ -0.91
USP4-214ENST00000491791 BOLA1Q9Y3E2 137 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 NCOA6Q14686 2063 aaPredicted RBP9.39□□□□□ -0.91
USP4-214ENST00000491791 COL6A6A6NMZ7 2263 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 DOCK10Q96BY6 2186 aa9.39□□□□□ -0.91
USP4-214ENST00000491791 UBE2QL1A1L167 161 aa9.38□□□□□ -0.91
USP4-214ENST00000491791 CDRT15L2A8MXV6 281 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms