RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 OOEPA6NGQ2 149 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 SAC3D1A6NKF1 404 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 C3orf80F5H4A9 247 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 PSMD9O00233 223 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 ZNF254O75437 659 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 RGS9O75916 674 aaPredicted RBP12.6□□□□□ -0.39
USP39-217ENST00000491659 FSHBP01225 129 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 FPR2P25090 351 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 EPHA2P29317 976 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 NPY4RP50391 375 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 RIDAP52758 137 aaKnown RBP12.6□□□□□ -0.39
USP39-217ENST00000491659 ZNF829Q3KNS6 432 aaPredicted RBP12.6□□□□□ -0.39
USP39-217ENST00000491659 SFRP4Q6FHJ7 346 aaPredicted RBP12.6□□□□□ -0.39
USP39-217ENST00000491659 ZNF826PQ6ZT77 177 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 USP43Q70EL4 1123 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 COMMD2Q86X83 199 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 ZNF679Q8IYX0 411 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 SEMA6DQ8NFY4 1073 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 OR1M1Q8NGA1 313 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 FAM81AQ8TBF8 368 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 OR8B4Q96RC9 309 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 MNTQ99583 582 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 SLC6A7Q99884 636 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 RTL8AQ9BWD3 113 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 TTTY10Q9BZA0 68 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 RIBC2Q9H4K1 309 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 ERVK-18Q9QC07 812 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 RRP15Q9Y3B9 282 aaKnown RBP12.6□□□□□ -0.39
USP39-217ENST00000491659 RHBDD3Q9Y3P4 386 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 MPC1Q9Y5U8 109 aa12.6□□□□□ -0.39
USP39-217ENST00000491659 TMEM269A0A1B0GVZ9 245 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 ACOD1A6NK06 481 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 NDUFA2O43678 99 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 VENTXO95231 258 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 DCTDP32321 178 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 PSMB10P40306 273 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 HILS1P60008 231 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 HOXA4Q00056 320 aaPredicted RBP12.59□□□□□ -0.39
USP39-217ENST00000491659 ROM1Q03395 351 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 PRDX4Q13162 271 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 WDR25Q64LD2 544 aaPredicted RBP12.59□□□□□ -0.39
USP39-217ENST00000491659 LYPD2Q6UXB3 125 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 BCDIN3DQ7Z5W3 292 aaKnown RBP12.59□□□□□ -0.39
USP39-217ENST00000491659 SLC35F2Q8IXU6 374 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 GCSAMQ8N6F7 178 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 LRRC29Q8WV35 223 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 ZFAND2BQ8WV99 257 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 PYDC1Q8WXC3 89 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 RAB40AQ8WXH6 277 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 LYZL4Q96KX0 146 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 TECTBQ96PL2 329 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 IL4I1Q96RQ9 567 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 RBM4BQ9BQ04 359 aaKnown RBP12.59□□□□□ -0.39
USP39-217ENST00000491659 OSBPL10Q9BXB5 764 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 GABARAPL3Q9BY60 117 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 RNPEPL1Q9HAU8 725 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 FAM206AQ9NX38 181 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 COPS3Q9UNS2 423 aa12.59□□□□□ -0.39
USP39-217ENST00000491659 A0A0U1RQV5 110 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 TMEM210A6NLX4 147 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ZNF850A8MQ14 1090 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ZNF670-ZNF695F2Z2N8 137 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 TRIM77I1YAP6 450 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ADAM20O43506 726 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 CST4P01036 141 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 EGR1P18146 543 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ACKR3P25106 362 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 CXCR4P61073 352 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ACTR3P61158 418 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 CSNK2BP67870 215 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 PAX2Q02962 417 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 PAX8Q06710 450 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 AADACL4Q5VUY2 407 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ZNF322Q6U7Q0 402 aaPredicted RBP12.58□□□□□ -0.4
USP39-217ENST00000491659 KCTD8Q6ZWB6 473 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 WDR86Q86TI4 376 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ZDHHC23Q8IYP9 409 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 GALNT4Q8N4A0 578 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 PIGCQ92535 297 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ITPKCQ96DU7 683 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 NUDT16L1Q9BRJ7 211 aaKnown RBP12.58□□□□□ -0.4
USP39-217ENST00000491659 PBOV1Q9GZY1 135 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 MOB1AQ9H8S9 216 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ADGRL4Q9HBW9 690 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 NUP50Q9UKX7 468 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 GTF2A1LQ9UNN4 478 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 ORC6Q9Y5N6 252 aa12.58□□□□□ -0.4
USP39-217ENST00000491659 DNHD1Q96M86 4753 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 ZNF816-ZNF321PA0A0X1KG74 233 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 ENSAO43768 121 aaKnown RBP12.57□□□□□ -0.4
USP39-217ENST00000491659 GYPAP02724 150 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 PPIAL4GP0DN37 164 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 MAP2K3P46734 347 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 EFNB1P98172 346 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 POU4F2Q12837 409 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 TEX36Q5VZQ5 186 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 CD276Q5ZPR3 534 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 ZFP1Q6P2D0 407 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 WDR82Q6UXN9 313 aa12.57□□□□□ -0.4
USP39-217ENST00000491659 RBMS3Q6XE24 437 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms