RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 H1FXQ92522 213 aaKnown RBP12.45□□□□□ -0.42
MCF2L-228ENST00000487354 C7orf34Q96L11 122 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 RAB3IPQ96QF0 476 aaPredicted RBP12.45□□□□□ -0.42
MCF2L-228ENST00000487354 CITED2Q99967 270 aaPredicted RBP12.45□□□□□ -0.42
MCF2L-228ENST00000487354 SIKE1Q9BRV8 207 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 ELL3Q9HB65 397 aaPredicted RBP12.45□□□□□ -0.42
MCF2L-228ENST00000487354 SAR1AQ9NR31 198 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 KCNG2Q9UJ96 466 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 RYR2Q92736 4967 aa12.45□□□□□ -0.42
MCF2L-228ENST00000487354 DYNC2H1Q8NCM8 4307 aaKnown RBP12.44□□□□□ -0.42
MCF2L-228ENST00000487354 LOC100653049A0A140TA62 436 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 TVP23AA6NH52 213 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 CDIPTO14735 213 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 KRT34O76011 436 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 DIRAS1O95057 198 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 HLA-DQA2P01906 255 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 NOS3P29474 1203 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 PYCR1P32322 319 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 BMXP51813 675 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 PRKXP51817 358 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 LIPEQ05469 1076 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 MZT1Q08AG7 82 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 AANATQ16613 207 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 LRRC10Q5BKY1 277 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 ZBTB37Q5TC79 503 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 FKBP9P1Q75LS8 142 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 SLC16A9Q7RTY1 509 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 NDUFA11Q86Y39 141 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 ZDHHC21Q8IVQ6 265 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 FAM86B1Q8N7N1 296 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 OR4S1Q8NGB4 309 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 OR8S1Q8NH09 359 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 ANGPTL6Q8NI99 470 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 RCN3Q96D15 328 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 CLPTM1LQ96KA5 538 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 DNTTIP1Q9H147 329 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 OPA3Q9H6K4 179 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 SNTG1Q9NSN8 517 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 INTS9Q9NV88 658 aaKnown RBP12.44□□□□□ -0.42
MCF2L-228ENST00000487354 HAO2Q9NYQ3 351 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 CAPN7Q9Y6W3 813 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 COMMD3-BMI1R4GMX3 469 aa12.44□□□□□ -0.42
MCF2L-228ENST00000487354 DSCAML1Q8TD84 2053 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 hCG_38984A0A1B0GV85 526 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 IGLL1P15814 213 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 SLC6A6P31641 620 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 GRK5P34947 590 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 CGB2Q6NT52 195 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 C8orf82Q6P1X6 216 aaPredicted RBP12.43□□□□□ -0.42
MCF2L-228ENST00000487354 CCBE1Q6UXH8 406 aaPredicted RBP12.43□□□□□ -0.42
MCF2L-228ENST00000487354 PRSS45Q7RTY3 260 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 DCXRQ7Z4W1 244 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 CYP4Z1Q86W10 505 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 WFDC9Q8NEX5 89 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 OR51G2Q8NGK0 314 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 OR9Q1Q8NGQ5 310 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 R3HDM4Q96D70 268 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 DUS3LQ96G46 650 aaKnown RBP12.43□□□□□ -0.42
MCF2L-228ENST00000487354 NPFFR1Q9GZQ6 430 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 WNT10AQ9GZT5 417 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 GID8Q9NWU2 228 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 ZNF319Q9P2F9 582 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 SLC25A10Q9UBX3 287 aaPredicted RBP12.43□□□□□ -0.42
MCF2L-228ENST00000487354 ZNF391Q9UJN7 358 aa12.43□□□□□ -0.42
MCF2L-228ENST00000487354 ANKRD30BLA7E2S9 258 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 SIGLEC5O15389 551 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 XRCC2O43543 280 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 NCK1P16333 377 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 RHCEP18577 417 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 DDOSTP39656 456 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 GSK3BP49841 420 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 CAV3P56539 151 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 GMFBP60983 142 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.42□□□□□ -0.42
MCF2L-228ENST00000487354 DYNAPQ8N1N2 210 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 C11orf42Q8N5U0 333 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 OR52J3Q8NH60 311 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 SGK3Q96BR1 496 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 KCNJ15Q99712 375 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 COPS4Q9BT78 406 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 IFT27Q9BW83 186 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 RAB18Q9NP72 206 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 ZNF222Q9UK12 451 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 RHBDD3Q9Y3P4 386 aa12.42□□□□□ -0.42
MCF2L-228ENST00000487354 ANGPTL7O43827 346 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 TIPRLO75663 272 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 ACAA1P09110 424 aaPredicted RBP12.41□□□□□ -0.42
MCF2L-228ENST00000487354 DCTDP32321 178 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 KRTAP10-11P60412 298 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 EMX1Q04741 257 aaPredicted RBP12.41□□□□□ -0.42
MCF2L-228ENST00000487354 MAPRE2Q15555 327 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 SLC35F1Q5T1Q4 408 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 LIAT1Q6ZQX7 453 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 Q6ZS46 218 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 MKXQ8IYA7 352 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 CYB561A3Q8NBI2 242 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 PAPD5Q8NDF8 572 aaKnown RBP12.41□□□□□ -0.42
MCF2L-228ENST00000487354 OR4F17Q8NGA8 305 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 OR51L1Q8NGJ5 315 aa12.41□□□□□ -0.42
MCF2L-228ENST00000487354 OR10Z1Q8NGY1 313 aa12.41□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms