RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 GBX2P52951 348 aaPredicted RBP6.83□□□□□ -1.32
USP40-216ENST00000485943 ZNF92Q03936 586 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 LOXL1Q08397 574 aaPredicted RBP6.83□□□□□ -1.32
USP40-216ENST00000485943 RIPPLY1Q0D2K3 151 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 PCK2Q16822 640 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 TMEM249Q2WGJ8 235 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ANKRD39Q53RE8 183 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ESCO2Q56NI9 601 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 PLCXD3Q63HM9 321 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 TMPRSS11AQ6ZMR5 421 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 KCTD20Q7Z5Y7 419 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ZDHHC23Q8IYP9 409 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 STX19Q8N4C7 294 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 LINC01356Q8N9X3 169 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 OR51F2Q8NH61 342 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ZNRF4Q8WWF5 429 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ERGIC1Q969X5 290 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 OR8B4Q96RC9 309 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 DDOQ99489 341 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 BEX2Q9BXY8 128 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 PBOV1Q9GZY1 135 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 POFUT1Q9H488 388 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 LPAR2Q9HBW0 351 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 PNRC2Q9NPJ4 139 aaKnown RBP6.83□□□□□ -1.32
USP40-216ENST00000485943 TRIM36Q9NQ86 728 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 TMEM106BQ9NUM4 274 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 FAM118AQ9NWS6 357 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 DNAJB11Q9UBS4 358 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ENPP5Q9UJA9 477 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 OR52A1Q9UKL2 312 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 SLC7A11Q9UPY5 501 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 NPTNQ9Y639 398 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 R4GMQ9 66 aa6.83□□□□□ -1.32
USP40-216ENST00000485943 ZNF816-ZNF321PA0A0X1KG74 233 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 A0A1W2PQL4 384 aaPredicted RBP6.82□□□□□ -1.32
USP40-216ENST00000485943 FAM181BA6NEQ2 426 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 CCDC182A6NF36 153 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 B4DSR2 109 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 MYL12BO14950 172 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 MAGEB3O15480 346 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 SYT7O43581 403 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 LMX1BO60663 402 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 FAM20BO75063 409 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 LY6G6DO95868 133 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 ATP6V1B1P15313 513 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 RPS2P15880 293 aaKnown RBP6.82□□□□□ -1.32
USP40-216ENST00000485943 HSPA13P48723 471 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 GSK3AP49840 483 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 SNRPGP62308 76 aaKnown RBP6.82□□□□□ -1.32
USP40-216ENST00000485943 ELF3P78545 371 aaPredicted RBP6.82□□□□□ -1.32
USP40-216ENST00000485943 SLC34A1Q06495 639 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 IL18R1Q13478 541 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 MSMPQ1L6U9 139 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 CHRFAM7AQ494W8 412 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 ZNF684Q5T5D7 378 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 AADACL4Q5VUY2 407 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 MOB3CQ70IA8 216 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 DOK3Q7L591 496 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 CIARTQ8N365 385 aaPredicted RBP6.82□□□□□ -1.32
USP40-216ENST00000485943 ACBD7Q8N6N7 88 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 ZNF676Q8N7Q3 588 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 OR8B12Q8NGG6 310 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 OR8B3Q8NGG8 313 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 OR10S1Q8NGN2 331 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 OR51E1Q8TCB6 317 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 HAVCR2Q8TDQ0 301 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 TSEN15Q8WW01 171 aaKnown RBP6.82□□□□□ -1.32
USP40-216ENST00000485943 IGFBPL1Q8WX77 278 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 GTF3AQ92664 365 aaKnown RBP6.82□□□□□ -1.32
USP40-216ENST00000485943 RNF170Q96K19 258 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 OR8B2Q96RD0 313 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 SMR3AQ99954 134 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 SLC30A2Q9BRI3 323 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 Q9H521 79 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 ADGRL4Q9HBW9 690 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 SCN3BQ9NY72 215 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 HAO2Q9NYQ3 351 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 LPAR3Q9UBY5 353 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 OR5V1Q9UGF6 321 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 PIGLQ9Y2B2 252 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 WIPI2Q9Y4P8 454 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 MPC1Q9Y5U8 109 aa6.82□□□□□ -1.32
USP40-216ENST00000485943 F8P00451 2351 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 ITPR3Q14573 2671 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 PPIAL4EA0A075B759 164 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 TRAV38-1A0A0B4J264 116 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 NKX6-3A6NJ46 265 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 ZNF850A8MQ14 1090 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 PPIAL4DF5H284 164 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 H3BSH0 61 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 CD5LO43866 347 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 FOXH1O75593 365 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 GATBO75879 557 aaKnown RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 SULT1C4O75897 302 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 NCR1O76036 304 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 CYB5R3P00387 301 aaPredicted RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 CD55P08174 381 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 CCDC159P0C7I6 412 aa6.81□□□□□ -1.32
USP40-216ENST00000485943 UBCP0CG48 685 aaKnown RBP6.81□□□□□ -1.32
USP40-216ENST00000485943 PPIAL4FP0DN26 164 aa6.81□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms