RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 TGIF1Q15583 401 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 PCK2Q16822 640 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 C21orf62-AS1Q17RA5 79 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 TANGO2Q6ICL3 276 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 LHFPL1Q86WI0 220 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 YAF2Q8IY57 180 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 C19orf47Q8N9M1 422 aaKnown RBP11.79□□□□□ -0.52
USP40-214ENST00000483519 ZNF248Q8NDW4 579 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 OR1J1Q8NGS3 322 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 INTS12Q96CB8 462 aaKnown RBP11.79□□□□□ -0.52
USP40-214ENST00000483519 SLC46A1Q96NT5 459 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 IP6K3Q96PC2 410 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 SPACA1Q9HBV2 294 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 C1orf123Q9NWV4 160 aa11.79□□□□□ -0.52
USP40-214ENST00000483519 CPAMD8Q8IZJ3 1885 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 TRBV23-1A0A0A0MS06 115 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 FRG2CA6NGY1 282 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 C19orf67A6NJJ6 358 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 NSA2O95478 260 aaKnown RBP11.78□□□□□ -0.52
USP40-214ENST00000483519 MPIG6BO95866 241 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 FCGR2CP31995 323 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 P2RY4P51582 365 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 POLR2HP52434 150 aaKnown RBP11.78□□□□□ -0.52
USP40-214ENST00000483519 SLC37A1P57057 533 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 GUK1Q16774 197 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 MIDNQ504T8 468 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 C1orf140Q5VVS0 124 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 ADAM5Q6NVV9 412 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 RTN4RL2Q86UN3 420 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 KCNG3Q8TAE7 436 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 RHBDD1Q8TEB9 315 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 RNF133Q8WVZ7 376 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 BMFQ96LC9 184 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 LMAN1LQ9HAT1 526 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 FAM206AQ9NX38 181 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 MRPS28Q9Y2Q9 187 aaKnown RBP11.78□□□□□ -0.52
USP40-214ENST00000483519 PMS2P1A4D2B8 440 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 ZNF729A6NN14 1252 aaPredicted RBP11.78□□□□□ -0.52
USP40-214ENST00000483519 A8MVM7 634 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 TTRP02766 147 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 FREM3P0C091 2139 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 ZNF708P17019 499 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 ZNF20P17024 532 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 IL12BP29460 328 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 SULT1A1P50225 295 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 TAS2R46P59540 309 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 PLAC9Q5JTB6 97 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 NSUN5P2Q63ZY6 315 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 OR2A2Q6IF42 318 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 GLIPR1L1Q6UWM5 242 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 FAM219AQ8IW50 185 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 AVL9Q8NBF6 648 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 UBAC2Q8NBM4 344 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 OR13G1Q8NGZ3 307 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 EMG1Q92979 244 aaKnown RBP11.78□□□□□ -0.52
USP40-214ENST00000483519 RSRP1Q9BUV0 290 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 PPP4R1LQ9P1A2 415 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 SRPK3Q9UPE1 567 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 B3GALT5Q9Y2C3 310 aa11.78□□□□□ -0.52
USP40-214ENST00000483519 ARHGEF17Q96PE2 2063 aaPredicted RBP11.78□□□□□ -0.52
USP40-214ENST00000483519 TMED7-TICAM2A0A0A6YYA0 188 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 A0A0A6YYD4 124 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 NPIPB7O75200 414 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 AHSA1O95433 338 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 OR2B8PP59922 312 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 RAB1AP62820 205 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 ARFRP1Q13795 201 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 IAH1Q2TAA2 248 aaPredicted RBP11.77□□□□□ -0.52
USP40-214ENST00000483519 ZNF529Q6P280 563 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 HIST2H3AQ71DI3 136 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 C1QL4Q86Z23 238 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 FAM24BQ8N5W8 94 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 OR56B1Q8NGI3 324 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 TMEM59Q9BXS4 323 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 EIF5A2Q9GZV4 153 aaKnown RBP11.77□□□□□ -0.52
USP40-214ENST00000483519 PBOV1Q9GZY1 135 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 PLA2G2EQ9NZK7 142 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 C14orf166Q9Y224 244 aaKnown RBP11.77□□□□□ -0.52
USP40-214ENST00000483519 OSGIN2Q9Y236 505 aa11.77□□□□□ -0.52
USP40-214ENST00000483519 KIR2DS5A0A0G2JLQ3 304 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 A0A0G2JNG1 304 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 UMAD1C9J7I0 102 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 KIR2DS3K7RE56 304 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 SOCS1O15524 211 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 CDC14BO60729 498 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 DEDDO75618 318 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 RPS2P15880 293 aaKnown RBP11.77□□□□□ -0.53
USP40-214ENST00000483519 RBMXP38159 391 aaKnown RBP11.77□□□□□ -0.53
USP40-214ENST00000483519 TMEM33P57088 247 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 ZNF616Q08AN1 781 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 KIR2DS5Q14953 304 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 SURF2Q15527 256 aaPredicted RBP11.77□□□□□ -0.53
USP40-214ENST00000483519 AADACL3Q5VUY0 350 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 GKN2Q86XP6 184 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 PRR22Q8IZ63 422 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 SLC37A2Q8TED4 501 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 MMABQ96EY8 250 aaPredicted RBP11.77□□□□□ -0.53
USP40-214ENST00000483519 C20orf24Q9BUV8 137 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 RTN4RQ9BZR6 473 aa11.77□□□□□ -0.53
USP40-214ENST00000483519 TOLLIPQ9H0E2 274 aa11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms