RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 YIF1BQ5BJH7 314 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 TEX30Q5JUR7 227 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 TPRG1LQ5T0D9 272 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 OR2T5Q6IEZ7 315 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 OPN5Q6U736 354 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 CD300LGQ6UXG3 332 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 NEGR1Q7Z3B1 354 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 MDP1Q86V88 176 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 OR4M1Q8NGD0 313 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 OR13G1Q8NGZ3 307 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 OR2T29Q8NH02 315 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 RERGQ96A58 199 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 KCNS1Q96KK3 526 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 UBE2E2Q96LR5 201 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 OR4K3Q96R72 315 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 TEAD3Q99594 435 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 CDX2Q99626 313 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 BCL7BQ9BQE9 202 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF2Q9BSG1 426 aaPredicted RBP1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 IL22Q9GZX6 179 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 ING2Q9H160 280 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 REEP1Q9H902 201 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 DYRK4Q9NR20 520 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 FBXO8Q9NRD0 319 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 RBFOX1Q9NWB1 397 aaKnown RBP1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 RHBDL2Q9NX52 303 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 ZMAT5Q9UDW3 170 aaKnown RBP1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF257Q9Y2Q1 563 aa1.58□□□□□ -2.16
CCDC88A-212ENST00000474059 NUP214P35658 2090 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 A0A0A6YYD5 115 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 ARPC4-TTLL3A0A0A6YYG9 625 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 A0A0B4J2E0 115 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 LOC100653049A0A140TA62 436 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 HACD1B0YJ81 288 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 K7EM74 188 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 TRDMT1O14717 391 aaKnown RBP1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 KRT34O76011 436 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 TRBV12-3P01733 135 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 IL4P05112 153 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 GFAPP14136 432 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 PRLHRP49683 370 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 PSMD4P55036 377 aaKnown RBP1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 CLDN6P56747 220 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 IFITM3Q01628 133 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 PRSS8Q16651 343 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 SLC25A35Q3KQZ1 300 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 MLIPQ5VWP3 458 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 TMEM236Q5W0B7 351 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 ULK3Q6PHR2 472 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 UNQ9165/PRO28630Q6UXU0 137 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 ZNF321PQ8N8H1 164 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 GATSQ8NAP1 163 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 OR5T1Q8NG75 326 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 OR5T3Q8NGG3 340 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 OR9A2Q8NGT5 310 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 TCP10LQ8TDR4 215 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 RTN4IP1Q8WWV3 396 aaPredicted RBP1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 TREX1Q9NSU2 369 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 C21orf62Q9NYP8 219 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 ADA2Q9NZK5 511 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 FARSAQ9Y285 508 aaKnown RBP1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 SIGLEC9Q9Y336 463 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 CBY1Q9Y3M2 126 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 HES2Q9Y543 173 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 S4R3C0 116 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 SIGLEC1Q9BZZ2 1709 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 KIF27Q86VH2 1401 aa1.57□□□□□ -2.16
CCDC88A-212ENST00000474059 PCM1Q15154 2024 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 IGHV3-49A0A0A0MS15 119 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 A0A1B0GUH1 482 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 A8MUU9 505 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 LINC01619G3V211 115 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 H0YC42 278 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 M0R1X1 148 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 MANBAO00462 879 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 CHMP2AO43633 222 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 PLIN3O60664 434 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 CYB5R3P00387 301 aaPredicted RBP1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 PTHP01270 115 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 IGLV2-8P01709 118 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 KLK1P06870 262 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 DCNP07585 359 aaKnown RBP1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 PRKACAP17612 351 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 APLNRP35414 380 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 PCK1P35558 622 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 TAS2R39P59534 338 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 KRTAP12-3P60328 96 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 PAFAH1B2P68402 229 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 RPL18AQ02543 176 aaKnown RBP1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 NAB1Q13506 487 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 OR1Q1Q15612 314 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 C6orf99Q4VX62 202 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 KRTAP13-2Q52LG2 175 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 KDM4DQ6B0I6 523 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 GUSBP11Q6P575 273 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 TMPRSS11AQ6ZMR5 421 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 OR2W3Q7Z3T1 314 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 VTCN1Q7Z7D3 282 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 LINC00523Q86TU6 105 aa1.56□□□□□ -2.16
CCDC88A-212ENST00000474059 DAW1Q8N136 415 aa1.56□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms