RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ERCC1P07992 297 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 MLF1P58340 268 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 KISS1Q15726 138 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 ASPHD2Q6ICH7 369 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 SLC25A43Q8WUT9 341 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 IL1F10Q8WWZ1 152 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 IMMP1LQ96LU5 166 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 MFFQ9GZY8 342 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 COPZ2Q9P299 210 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 MTFP1Q9UDX5 166 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 IGLV3-12A0A075B6K2 115 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 BET1O15155 118 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 SELEP16581 610 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF16P17020 682 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 ARF1P84077 181 aaKnown RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 ZNF385CQ66K41 422 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 VHLLQ6RSH7 139 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 C5orf46Q6UWT4 87 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 CXorf67Q86X51 503 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 FGFBP3Q8TAT2 258 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 PLPPR2Q96GM1 343 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 FOXB1Q99853 325 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 FAAP24Q9BTP7 215 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 GHITMQ9H3K2 345 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 RANBP3Q9H6Z4 567 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 B4GALT7Q9UBV7 327 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 BOKQ9UMX3 212 aaPredicted RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 TMEM265A0A087WTH1 108 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 ANKRD34BA5PLL1 514 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 AQP7P3A6NL99 342 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 MGMTP16455 207 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 CLEC9AQ6UXN8 241 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 MEX3BQ6ZN04 569 aaKnown RBP12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 REEP6Q96HR9 211 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 TAAR9Q96RI9 348 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 OR10A2Q9H208 303 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 KLK13Q9UKR3 277 aa12.09□□□□□ -0.47
CCDC88A-211ENST00000471947 ANKRD20A5PA0PJZ0 165 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 EIF1BO60739 113 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 CFDP00746 253 aaPredicted RBP12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 CAPZA1P52907 286 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 TRIP6Q15654 476 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 ELMOD2Q8IZ81 293 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 FAM181AQ8N9Y4 354 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 ZFAND1Q8TCF1 268 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 FBXO17Q96EF6 278 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 SGCZQ96LD1 299 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 DLL4Q9NR61 685 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 ETV7Q9Y603 341 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 USF3Q68DE3 2245 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 F5H0A9 414 aaPredicted RBP12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 RAD51DO75771 328 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 GALP22466 123 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 IDH3GP51553 393 aaPredicted RBP12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 DEFB109BQ30KR1 87 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 PABPC1L2AQ5JQF8 200 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 CARFQ8N187 725 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 GTPBP8Q8N3Z3 284 aaPredicted RBP12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 OR2V1Q8NHB1 315 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 ZFP64Q9NPA5 681 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 AGPAT2O15120 278 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 SULT1B1O43704 296 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 LPLP06858 475 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 OPCMLQ14982 345 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 SULF2Q8IWU5 870 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 RNASE11Q8TAA1 199 aaKnown RBP12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 RNF166Q96A37 237 aaPredicted RBP12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 FAM210AQ96ND0 272 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 C12orf10Q9HB07 376 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 NPAP1Q9NZP6 1156 aa12.08□□□□□ -0.48
CCDC88A-211ENST00000471947 ADAP1O75689 374 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 OR4E1P0C645 316 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 ICAM2P13598 275 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 NAGAP17050 411 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 RAC1P63000 192 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 ALKBH6Q3KRA9 238 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 DCAF10Q5QP82 559 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 ELFN2Q5R3F8 820 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 SLC25A26Q70HW3 274 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 ADAD2Q8NCV1 583 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 OR6X1Q8NH79 312 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 PHYHIPQ92561 330 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 CST11Q9H112 138 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 KCNK7Q9Y2U2 307 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 EML5Q05BV3 1969 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 LGALS8O00214 317 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 SUMO3P55854 103 aaPredicted RBP12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 HIKESHIQ53FT3 197 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 MRPL21Q7Z2W9 205 aaKnown RBP12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 ZNF546Q86UE3 836 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 SPERTQ8NA61 448 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 RDH5Q92781 318 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 SCMH1Q96GD3 660 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 ZNF488Q96MN9 340 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 HIST1H2AAQ96QV6 131 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 NELFAQ9H3P2 528 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 SLC7A10Q9NS82 523 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 FAM206AQ9NX38 181 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 A6NLC8 198 aa12.07□□□□□ -0.48
CCDC88A-211ENST00000471947 OR2AT4A6NND4 320 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms