RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 OR4K15Q8NH41 348 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 OR4X1Q8NH49 305 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 TSLPQ969D9 159 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 ERGIC1Q969X5 290 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 RASD2Q96D21 266 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 YPEL4Q96NS1 127 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 SYT3Q9BQG1 590 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 AIF1LQ9BQI0 150 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 PRSS27Q9BQR3 290 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 ALG12Q9BV10 488 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 ELP3Q9H9T3 547 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 PLEKHA2Q9HB19 425 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP3.77□□□□□ -1.81
VPS50-210ENST00000471188 B4GALT6Q9UBX8 382 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 YBX2Q9Y2T7 364 aaKnown RBP3.77□□□□□ -1.81
VPS50-210ENST00000471188 PPIAL4AQ9Y536 164 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 USP34Q70CQ2 3546 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 TRBV11-1A0A0K0K1C0 115 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 CENPVL1A0A0U1RR11 272 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 NDUFS4O43181 175 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 XRCC2O43543 280 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 NDUFB2O95178 105 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 NSA2O95478 260 aaKnown RBP3.77□□□□□ -1.81
VPS50-210ENST00000471188 C1orf105O95561 183 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 IGLV3-27P01718 113 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 LCATP04180 440 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 RBMXP38159 391 aaKnown RBP3.77□□□□□ -1.81
VPS50-210ENST00000471188 CDKN1BP46527 198 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 CCL20P78556 96 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 P2RY6Q15077 328 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 FAM78AQ5JUQ0 283 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 C1orf194Q5T5A4 169 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 MRPL2Q5T653 305 aaKnown RBP3.77□□□□□ -1.81
VPS50-210ENST00000471188 TMEM184AQ6ZMB5 413 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 SLC16A14Q7RTX9 510 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 COX18Q8N8Q8 333 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 SLC26A10Q8NG04 563 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 ZPLD1Q8TCW7 415 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 RNASEH2CQ8TDP1 164 aaKnown RBP3.77□□□□□ -1.81
VPS50-210ENST00000471188 IL22RA2Q969J5 263 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 NRTNQ99748 197 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 ALKBH7Q9BT30 221 aaPredicted RBP3.77□□□□□ -1.81
VPS50-210ENST00000471188 Q9N2J8 555 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 RAB18Q9NP72 206 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 ZFP30Q9Y2G7 519 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 RBM7Q9Y580 266 aaKnown RBP3.77□□□□□ -1.81
VPS50-210ENST00000471188 PLXNB3Q9ULL4 1909 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 XIRP2A4UGR9 3374 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 COL4A5P29400 1685 aa3.77□□□□□ -1.81
VPS50-210ENST00000471188 MTCL1Q9Y4B5 1905 aaKnown RBP3.76□□□□□ -1.81
VPS50-210ENST00000471188 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 ZNF860A6NHJ4 632 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 PPP5D1E7EU14 171 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 TNFSF12O43508 249 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 KAT7O95251 611 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 CEACAM1P13688 526 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 GNB3P16520 340 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 CSNK2A2P19784 350 aaPredicted RBP3.76□□□□□ -1.81
VPS50-210ENST00000471188 CXCR1P25024 350 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 OR3A2P47893 321 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 DNASE1L1P49184 302 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 PPM1FP49593 454 aaPredicted RBP3.76□□□□□ -1.81
VPS50-210ENST00000471188 RND3P61587 244 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 RPL23AP62750 156 aaKnown RBP3.76□□□□□ -1.81
VPS50-210ENST00000471188 HLA-DRB3P79483 266 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 CDKN3Q16667 212 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 ATP6V1FQ16864 119 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 ANKRD55Q3KP44 614 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 HIKESHIQ53FT3 197 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 EIPR1Q53HC9 387 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 RIPPLY2Q5TAB7 128 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 CST9Q5W186 159 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 FAHD2BQ6P2I3 314 aaPredicted RBP3.76□□□□□ -1.81
VPS50-210ENST00000471188 DPY19L4Q7Z388 723 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 S100A7AQ86SG5 101 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 SGPP2Q8IWX5 399 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 TMEM123Q8N131 208 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 NUDT10Q8NFP7 164 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 OR2L3Q8NG85 312 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 OR4C5Q8NGB2 326 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 OR52N4Q8NGI2 321 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 OR13C3Q8NGS6 347 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 FNDC9Q8TBE3 224 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 STT3BQ8TCJ2 826 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 WFDC5Q8TCV5 224 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 TIFAQ96CG3 184 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 SLC35A4Q96G79 324 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 FAHD2AQ96GK7 314 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 FOXN4Q96NZ1 517 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 ALKBH3Q96Q83 286 aaPredicted RBP3.76□□□□□ -1.81
VPS50-210ENST00000471188 PRRX2Q99811 253 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 GINS3Q9BRX5 216 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 MS4A8Q9BY19 250 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 SLC26A1Q9H2B4 701 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 ARV1Q9H2C2 271 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 MTHFD2LQ9H903 347 aaPredicted RBP3.76□□□□□ -1.81
VPS50-210ENST00000471188 CHST11Q9NPF2 352 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 LRFN1Q9P244 771 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 NAGKQ9UJ70 344 aa3.76□□□□□ -1.81
VPS50-210ENST00000471188 DHDHQ9UQ10 334 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms