RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 RGCCQ9H4X1 137 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ESM1Q9NQ30 184 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF319Q9P2F9 582 aa10.06□□□□□ -0.8
SQSTM1-206ENST00000466342 IRGMA1A4Y4 181 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 METTL15A6NJ78 407 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 LOC110117498-PIK3R3F6TDL0 507 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 PNPP00491 289 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 IGHV1-46P01743 117 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 ADH4P08319 380 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 CFL1P23528 166 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 PRSS12P56730 875 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 UBA52P62987 128 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 MFGE8Q08431 387 aaPredicted RBP10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 CDONQ4KMG0 1287 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 LAIR2Q6ISS4 152 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 FAM220AQ7Z4H9 259 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 TEX29Q8N6K0 151 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 YIPF7Q8N8F6 280 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 OR8G5Q8NG78 346 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 OR8B12Q8NGG6 310 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 SGK3Q96BR1 496 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 REEP6Q96HR9 211 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 DIRC2Q96SL1 478 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 ANKRD60Q9BZ19 345 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 MOB1AQ9H8S9 216 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 UNKLQ9H9P5 680 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 MSL2Q9HCI7 577 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 FGF20Q9NP95 211 aaPredicted RBP10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 INPP5EQ9NRR6 644 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF275Q9NSD4 429 aaPredicted RBP10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 NUFIP1Q9UHK0 495 aaKnown RBP10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF391Q9UJN7 358 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 ZDHHC8Q9ULC8 765 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 MYRFQ9Y2G1 1151 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 R4GMQ9 66 aa10.05□□□□□ -0.8
SQSTM1-206ENST00000466342 A0A0U1RQV5 110 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 hCG_38984A0A1B0GV85 526 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 GGT3PA6NGU5 568 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 POM121CA8CG34 1229 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 CD300LBA8K4G0 201 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 SPRY3O43610 288 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 RP2O75695 350 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 NCR1O76036 304 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 RPP14O95059 124 aaKnown RBP10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 MYF6P23409 242 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 CRYBB2P43320 205 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 MAGEB1P43366 347 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 ACTA2P62736 377 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 ACTG2P63267 376 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 CCL8P80075 99 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 GALEQ14376 348 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 GFOD2Q3B7J2 385 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 TP53I3Q53FA7 332 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 FAM209AQ5JX71 171 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 Q6ZR03 302 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 KCTD20Q7Z5Y7 419 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 BHLHE23Q8NDY6 225 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 YIPF5Q969M3 257 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 MRPL48Q96GC5 212 aaKnown RBP10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 MYCBPQ99417 103 aaPredicted RBP10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 SLC30A2Q9BRI3 323 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 ZNF649Q9BS31 505 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 ALG8Q9BVK2 526 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 JAM3Q9BX67 310 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 PBOV1Q9GZY1 135 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 PLCXD1Q9NUJ7 323 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 ERVK13-1Q9NX77 482 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 GNG8Q9UK08 70 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 SNX5Q9Y5X3 404 aa10.04□□□□□ -0.8
SQSTM1-206ENST00000466342 WNK1Q9H4A3 2382 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 A0A1B0GWJ7 208 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 PPIHO43447 177 aaKnown RBP10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 FAM20BO75063 409 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 IGLV3-1P01715 115 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 TTRP02766 147 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 CD55P08174 381 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 PIPP12273 146 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 DCKP27707 260 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 DDOSTP39656 456 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 FAM3AP98173 230 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 OR8B8Q15620 311 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 TSTQ16762 297 aaKnown RBP10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 BCL2L15Q5TBC7 163 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 FAHD2BQ6P2I3 314 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 C1orf229Q6ZS94 237 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 LHFPL3Q86UP9 236 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 EGFL6Q8IUX8 553 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 OR2Z1Q8NG97 314 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 OR56B2PQ8NGI1 322 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 OR13G1Q8NGZ3 307 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 CLDND2Q8NHS1 167 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 SPRYD4Q8WW59 207 aaPredicted RBP10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 RORBQ92753 470 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 ELMOD3Q96FG2 381 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 FAHD2AQ96GK7 314 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 LYZL4Q96KX0 146 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 C4orf36Q96KX1 117 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 SIGLEC11Q96RL6 698 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 SLITRK2Q9H156 845 aa10.03□□□□□ -0.8
SQSTM1-206ENST00000466342 G6PC2Q9NQR9 355 aa10.03□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms