RNA–Protein interactions for RNA: ENST00000465471.5

SKA3-205, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 5

Gene SKA3, Length 930 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-205ENST00000465471 TREM2Q9NZC2 230 aa17.15■□□□□ 0.34
SKA3-205ENST00000465471 GTF2A1LQ9UNN4 478 aa17.15■□□□□ 0.34
SKA3-205ENST00000465471 RRP15Q9Y3B9 282 aaKnown RBP17.15■□□□□ 0.34
SKA3-205ENST00000465471 WIPI2Q9Y4P8 454 aa17.15■□□□□ 0.34
SKA3-205ENST00000465471 ABCA1O95477 2261 aa17.15■□□□□ 0.34
SKA3-205ENST00000465471 LOC100289279A0A1B0GTE1 492 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 IRGMA1A4Y4 181 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 IFNL4K9M1U5 179 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 DHRS3O75911 302 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 PIPP12273 146 aaPredicted RBP17.14■□□□□ 0.33
SKA3-205ENST00000465471 DCKP27707 260 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 PMELP40967 661 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 KIR3DL2P43630 455 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 MAP2K3P46734 347 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 CHN2P52757 468 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 ZBTB37Q5TC79 503 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 FTMTQ8N4E7 242 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 ERGIC1Q969X5 290 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 ITPKCQ96DU7 683 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 MRPL48Q96GC5 212 aaKnown RBP17.14■□□□□ 0.33
SKA3-205ENST00000465471 C4orf36Q96KX1 117 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 MYCBPQ99417 103 aaPredicted RBP17.14■□□□□ 0.33
SKA3-205ENST00000465471 PPP1R3EQ9H7J1 279 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 DIMT1Q9UNQ2 313 aaKnown RBP17.14■□□□□ 0.33
SKA3-205ENST00000465471 MPC1Q9Y5U8 109 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 V9GYS6 101 aa17.14■□□□□ 0.33
SKA3-205ENST00000465471 NSD1Q96L73 2696 aaPredicted RBP17.14■□□□□ 0.33
SKA3-205ENST00000465471 DHRS7CA6NNS2 312 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 WNT9BO14905 357 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 LY6G6DO95868 133 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 HEXAP06865 529 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 RBMXP38159 391 aaKnown RBP17.13■□□□□ 0.33
SKA3-205ENST00000465471 PSMB10P40306 273 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 NANOS3P60323 173 aaKnown RBP17.13■□□□□ 0.33
SKA3-205ENST00000465471 IZUMO2Q6UXV1 221 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 MOGAT3Q86VF5 341 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 SEMA6DQ8NFY4 1073 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 OR2G2Q8NGZ5 317 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 GGHQ92820 318 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 HPS1Q92902 700 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 C1orf159Q96HA4 380 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 FAM71F1Q96KD3 344 aaPredicted RBP17.13■□□□□ 0.33
SKA3-205ENST00000465471 PAPOLGQ9BWT3 736 aaKnown RBP17.13■□□□□ 0.33
SKA3-205ENST00000465471 ANKRD60Q9BZ19 345 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 ISG20L2Q9H9L3 353 aaKnown RBP17.13■□□□□ 0.33
SKA3-205ENST00000465471 ABCB9Q9NP78 766 aa17.13■□□□□ 0.33
SKA3-205ENST00000465471 CNOT2Q9NZN8 540 aaKnown RBP17.13■□□□□ 0.33
SKA3-205ENST00000465471 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP17.12■□□□□ 0.33
SKA3-205ENST00000465471 ZNF816-ZNF321PA0A0X1KG74 233 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 LRP5LA4QPB2 252 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 TMEM178BH3BS89 294 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 J3QLW9 94 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 P2RY10O00398 339 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 MTRF1O75570 445 aaKnown RBP17.12■□□□□ 0.33
SKA3-205ENST00000465471 IGHV2-70P01814 119 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 IGHV4-31P0DP07 118 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 ZNF19P17023 458 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 CCR9P51686 369 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 MZT1Q08AG7 82 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 RIPPLY1Q0D2K3 151 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 PRDX4Q13162 271 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 AVPI1Q5T686 147 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 PRAMEF6Q5VXH4 476 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 CLEC9AQ6UXN8 241 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 DOK3Q7L591 496 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 WDR86Q86TI4 376 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 COMMD2Q86X83 199 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 OR14K1Q8NGZ2 314 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 CLDND2Q8NHS1 167 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 ZNF420Q8TAQ5 688 aaPredicted RBP17.12■□□□□ 0.33
SKA3-205ENST00000465471 HPSE2Q8WWQ2 592 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 RAB1CQ92928 201 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 TIMD4Q96H15 378 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 FGF23Q9GZV9 251 aaPredicted RBP17.12■□□□□ 0.33
SKA3-205ENST00000465471 FRRS1LQ9P0K9 344 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 NPTNQ9Y639 398 aa17.12■□□□□ 0.33
SKA3-205ENST00000465471 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP17.12■□□□□ 0.338e-11■■■□□ 18.8
SKA3-205ENST00000465471 IGHV3-64DA0A0J9YX35 117 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 XPNPEP2O43895 674 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 FSTL3O95633 263 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 UBCP0CG48 685 aaKnown RBP17.11■□□□□ 0.33
SKA3-205ENST00000465471 MYF6P23409 242 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 IL2RGP31785 369 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 GNALP38405 381 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 HSPA13P48723 471 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 ETV1P50549 477 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 MVKQ03426 396 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 MPPED2Q15777 294 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 TMEM42Q69YG0 159 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 OR5P3Q8WZ94 311 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 FKBP14Q9NWM8 211 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 C14orf119Q9NWQ9 140 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 PSORS1C1Q9UIG5 152 aa17.11■□□□□ 0.33
SKA3-205ENST00000465471 LOC107986453A0A1B0GWG9 222 aa17.1■□□□□ 0.33
SKA3-205ENST00000465471 EFCAB10A6NFE3 127 aa17.1■□□□□ 0.33
SKA3-205ENST00000465471 ZNF850A8MQ14 1090 aa17.1■□□□□ 0.33
SKA3-205ENST00000465471 CD5LO43866 347 aa17.1■□□□□ 0.33
SKA3-205ENST00000465471 HTR1AP08908 422 aa17.1■□□□□ 0.33
SKA3-205ENST00000465471 FAHP16930 419 aa17.1■□□□□ 0.33
SKA3-205ENST00000465471 VHLP40337 213 aa17.1■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms