RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 TEX30Q5JUR7 227 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 LINC01590Q5TEZ4 76 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 WDR82Q6UXN9 313 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 CYP2R1Q6VVX0 501 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 DPY19L4Q7Z388 723 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 LINC00471Q8N535 108 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 LY6G5BQ8NDX9 201 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 SGK3Q96BR1 496 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 RBM4BQ9BQ04 359 aaKnown RBP13.25□□□□□ -0.29
COL7A1-204ENST00000462475 SIRT7Q9NRC8 400 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 ARL8BQ9NVJ2 186 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 VNN3Q9NY84 501 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 DNAJC27Q9NZQ0 273 aa13.25□□□□□ -0.29
COL7A1-204ENST00000462475 A0A1B0GVI7 797 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 TIMM23O14925 209 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 CLPXO76031 633 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 AMY2BP19961 511 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 HSD11B1P28845 292 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 MAGEA2P43356 314 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 SLC15A1P46059 708 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 GRB2P62993 217 aaKnown RBP13.24□□□□□ -0.29
COL7A1-204ENST00000462475 TAF9Q16594 264 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 GFOD2Q3B7J2 385 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 FAM57BQ71RH2 274 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 PRSS45Q7RTY3 260 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 DEFB107AQ8IZN7 70 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 OR2T33Q8NG76 320 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 AMELYQ99218 206 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 PAPOLGQ9BWT3 736 aaKnown RBP13.24□□□□□ -0.29
COL7A1-204ENST00000462475 MED20Q9H944 212 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 ZNF319Q9P2F9 582 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 RHBDD3Q9Y3P4 386 aa13.24□□□□□ -0.29
COL7A1-204ENST00000462475 CDIPTO14735 213 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 SELLP14151 372 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 GSK3AP49840 483 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 ZNF121P58317 390 aaPredicted RBP13.23□□□□□ -0.29
COL7A1-204ENST00000462475 IKZF1Q13422 519 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 STUMQ69YW2 141 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 Q6ZSV7 163 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 SLC36A1Q7Z2H8 476 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 OR6N2Q8NGY6 317 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 RNF133Q8WVZ7 376 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 ABHD6Q9BV23 337 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 TLNRD1Q9H1K6 362 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 TOR3AQ9H497 397 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 ZNRD1Q9P1U0 126 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 DNAJB11Q9UBS4 358 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 TAGLN3Q9UI15 199 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 BAIAP2Q9UQB8 552 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 FAM96BQ9Y3D0 163 aa13.23□□□□□ -0.29
COL7A1-204ENST00000462475 A0A1W2PRD5 423 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 A0A1W2PRF3 423 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 A0A1W2PRM7 423 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 FAM183AA6NL82 134 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 RNASEK-C17orf49H0YIS7 233 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 TIPRLO75663 272 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 TSPAN15O95858 294 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 IFNGP01579 166 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 TFF1P04155 84 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 OPRL1P41146 370 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 GMFBP60983 142 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 KLRD1Q13241 179 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 METAP1DQ6UB28 335 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-204ENST00000462475 C16orf89Q6UX73 402 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 GDPGP1Q6ZNW5 385 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 ERI1Q8IV48 349 aaKnown RBP13.22□□□□□ -0.29
COL7A1-204ENST00000462475 Q8N7P7 452 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 ZSCAN4Q8NAM6 433 aaPredicted RBP13.22□□□□□ -0.29
COL7A1-204ENST00000462475 OR5T2Q8NGG2 359 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 LRTOMTQ8WZ04 291 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 UBE2FQ969M7 185 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 C12orf43Q96C57 262 aaKnown RBP13.22□□□□□ -0.29
COL7A1-204ENST00000462475 ITPKCQ96DU7 683 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 INTS14Q96SY0 518 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 WDR13Q9H1Z4 485 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 DPAGT1Q9H3H5 408 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 BRD7Q9NPI1 651 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 VPREB3Q9UKI3 123 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 PRPF19Q9UMS4 504 aaKnown RBP13.22□□□□□ -0.29
COL7A1-204ENST00000462475 U3KQV3 271 aa13.22□□□□□ -0.29
COL7A1-204ENST00000462475 TCRBV5S2A0A599 114 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 RIIAD1A6NNX1 92 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 NDUFB3O43676 98 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 FBP1P09467 338 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 ZNF3P17036 446 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 CFL1P23528 166 aaKnown RBP13.21□□□□□ -0.29
COL7A1-204ENST00000462475 GSTT1P30711 240 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 GNALP38405 381 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 NAA10P41227 235 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-204ENST00000462475 TGM4P49221 684 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 BLVRAP53004 296 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 DHRS7BQ6IAN0 325 aaPredicted RBP13.21□□□□□ -0.29
COL7A1-204ENST00000462475 PNKDQ8N490 385 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 GALNT4Q8N4A0 578 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 IQCF1Q8N6M8 205 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 CSNK2A3Q8NEV1 391 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 OR52H1Q8NGJ2 320 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 PGAM5Q96HS1 289 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 PKP2Q99959 881 aa13.21□□□□□ -0.29
COL7A1-204ENST00000462475 DCTN5Q9BTE1 182 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms