RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 APCDD1LQ8NCL9 501 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 OR10R2Q8NGX6 335 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 C22orf15Q8WYQ4 148 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SLAMF9Q96A28 289 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SLC26A1Q9H2B4 701 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 PI4KAP42356 2102 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 TGFBR3LH3BV60 316 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 I3L521 148 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 TERTO14746 1132 aaKnown RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 HSD17B6O14756 317 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 TMEM127O75204 238 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 DXOO77932 396 aaKnown RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SEMG1P04279 462 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 GSTP1P09211 210 aaKnown RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 CST2P09228 141 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 CTXN2P0C2S0 81 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 PTAFRP25105 342 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 ETV6P41212 452 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 LGALS4P56470 323 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 PPP1CBP62140 327 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 RPP30P78346 268 aaKnown RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF616Q08AN1 781 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 KISS1Q15726 138 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 CXorf67Q86X51 503 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 STOML3Q8TAV4 291 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 DEDD2Q8WXF8 326 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 METTL17Q9H7H0 456 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF275Q9NSD4 429 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 IGKV3D-11A0A0A0MRZ8 115 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SFTPCP11686 197 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 RAP2BP61225 183 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 ZP4Q12836 540 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SMIM21Q3B7S5 101 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 GABRG1Q8N1C3 465 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 FBXL14Q8N1E6 418 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 PRR7Q8TB68 274 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SGK3Q96BR1 496 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 GMPPAQ96IJ6 420 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SEC22AQ96IW7 307 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 EDARQ9UNE0 448 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 PRELID3BQ9Y3B1 194 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 H3BMH7 237 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 LIMS1P48059 325 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 BCL2A1Q16548 175 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF770Q6IQ21 691 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 OR8B12Q8NGG6 310 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 OR13G1Q8NGZ3 307 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 LRRC20Q8TCA0 184 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 MAFIPQ8WZ33 124 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 HRASLSQ9HDD0 168 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 TAS2R5Q9NYW4 299 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 FRMPD3Q5JV73 1810 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SDCBPO00560 298 aaPredicted RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 GPR137BO60478 399 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 IGHA1P01876 353 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 ACSM4P0C7M7 580 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 TNFRSF1AP19438 455 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 IL3RAP26951 378 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 PRSS12P56730 875 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SRPXP78539 464 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 PRDX4Q13162 271 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 KCNJ8Q15842 424 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 NUFIP2Q7Z417 695 aaKnown RBP6.56□□□□□ -1.36
SYNE1-213ENST00000448038 ARHGEF39Q8N4T4 335 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 TMEM38BQ9NVV0 291 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 GFOD1Q9NXC2 390 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 QPCTLQ9NXS2 382 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 TAS2R3Q9NYW6 316 aa6.56□□□□□ -1.36
SYNE1-213ENST00000448038 SPDEFO95238 335 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SPINK2P20155 84 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 CD79BP40259 229 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 RAB31Q13636 194 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 FBXW9Q5XUX1 488 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 DMKNQ6E0U4 476 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 OR5H6Q8NGV6 325 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ZPLD1Q8TCW7 415 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 CMBLQ96DG6 245 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ESRP2Q9H6T0 727 aaKnown RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 FN3KRPQ9HA64 309 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 AMDHD2Q9Y303 409 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 XRCC3O43542 346 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SORDQ00796 357 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ACSM1Q08AH1 577 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ZBTB44Q8NCP5 570 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SLC26A10Q8NG04 563 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 USB1Q9BQ65 265 aaKnown RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF2Q9BSG1 426 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 KCNJ16Q9NPI9 418 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SDK2Q58EX2 2172 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 CAMLGP49069 296 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 F2RL1P55085 397 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 RRAS2P62070 204 aaPredicted RBP6.55□□□□□ -1.36
SYNE1-213ENST00000448038 CFHR1Q03591 330 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 AKR1C8PQ5T2L2 129 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 TSPO2Q5TGU0 170 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 ZNF546Q86UE3 836 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 FAM131CQ96AQ9 280 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SEC22CQ9BRL7 303 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 UQCC2Q9BRT2 126 aa6.55□□□□□ -1.36
SYNE1-213ENST00000448038 SMIM3Q9BZL3 60 aa6.55□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms