RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 QDPRP09417 244 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 ABOP16442 354 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 MSR1P21757 451 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 BCKDHBP21953 392 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 OTX1P32242 354 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-207ENST00000433762 TMEM50BP56557 158 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 H3F3AP84243 136 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 SHBQ15464 509 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 GFOD2Q3B7J2 385 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 SLC22A6Q4U2R8 563 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 ELP2Q6IA86 826 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 TMPPEQ6ZT21 453 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 TMEM104Q8NE00 496 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 GJC3Q8NFK1 279 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 THAP3Q8WTV1 239 aaPredicted RBP12.05□□□□□ -0.48
COL6A3-207ENST00000433762 EMG1Q92979 244 aaKnown RBP12.05□□□□□ -0.48
COL6A3-207ENST00000433762 TMEM54Q969K7 222 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 NTNG2Q96CW9 530 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 AQP10Q96PS8 301 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 OR6C1Q96RD1 312 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 CRB3Q9BUF7 120 aa12.05□□□□□ -0.48
COL6A3-207ENST00000433762 ABCA7Q8IZY2 2146 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 C5orf51A6NDU8 294 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 CD79AP11912 226 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 OR3A4PP47883 348 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 ZNF84P51523 738 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 LRRC37A5PQ49AS3 106 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 BAP18Q8IXM2 172 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 ARMC10Q8N2F6 343 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 ZNF283Q8N7M2 679 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 CASTOR1Q8WTX7 329 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 RNF141Q8WVD5 230 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 TMEM230Q96A57 120 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 RASL10BQ96S79 203 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 NELFAQ9H3P2 528 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 WNT16Q9UBV4 365 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 PRELID1Q9Y255 219 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 CSAG2Q9Y5P2 127 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 FAM25EA8MYX2 175 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 SOCS1O15524 211 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 RRP8O43159 456 aaKnown RBP12.04□□□□□ -0.48
COL6A3-207ENST00000433762 DHRS3O75911 302 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 OR2J2O76002 312 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 APOC3P02656 99 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 GUCA1AP43080 201 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-207ENST00000433762 SUCLG1P53597 346 aaKnown RBP12.04□□□□□ -0.48
COL6A3-207ENST00000433762 MC2RQ01718 297 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 C10orf91Q5T1B1 145 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 FAM69BQ5VUD6 431 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 MRPL14Q6P1L8 145 aaKnown RBP12.04□□□□□ -0.48
COL6A3-207ENST00000433762 KCTD9Q7L273 389 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 COMMD2Q86X83 199 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 BPIFCQ8NFQ6 507 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 RNF126Q9BV68 326 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 DEFB126Q9BYW3 111 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 PRDM6Q9NQX0 595 aa12.04□□□□□ -0.48
COL6A3-207ENST00000433762 SPTBN5Q9NRC6 3674 aaKnown RBP12.04□□□□□ -0.48
COL6A3-207ENST00000433762 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 SHISA8B8ZZ34 492 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 DNASE2O00115 360 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 TAAR5O14804 337 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 LIPCP11150 499 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 AMY2BP19961 511 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 PTGFRP43088 359 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 MFAP5Q13361 173 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 FAM74A1Q5RGS3 127 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 CLEC18BQ6UXF7 455 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 IL34Q6ZMJ4 242 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 WDSUB1Q8N9V3 476 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 CLRN3Q8NCR9 226 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 DCUN1D4Q92564 292 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 ARL11Q969Q4 196 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 LRRC46Q96FV0 321 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 C2orf50Q96LR7 162 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 GPER1Q99527 375 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 CHST5Q9GZS9 411 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 PCDHB10Q9UN67 800 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 MEMO1Q9Y316 297 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 CHCHD2Q9Y6H1 151 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 UNC80Q8N2C7 3258 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 IGKV1-9A0A0C4DH69 117 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 EEF1E1-BLOC1S5C9J1V9 151 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 RER1O15258 196 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 DNPH1O43598 174 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 MTRF1O75570 445 aaKnown RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 CRTAPO75718 401 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 ATG12O94817 140 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 TIAF1O95411 115 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 H2AFB1P0C5Y9 115 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 PGAM2P15259 253 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 CPT2P23786 658 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 EPHA8P29322 1005 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 IL15RAQ13261 267 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 ZNF169Q14929 603 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 KISS1Q15726 138 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 FAM57BQ71RH2 274 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 CLDN23Q96B33 292 aa12.03□□□□□ -0.48
COL6A3-207ENST00000433762 SAT2Q96F10 170 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 CPNE2Q96FN4 548 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-207ENST00000433762 PGAM5Q96HS1 289 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms