RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 A0A087WUJ7 227 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 TRAV17A0A0B4J275 112 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 TCTN1Q2MV58 587 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 CYHR1Q6ZMK1 362 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 LINC01465Q8N7H1 131 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 OR2I1PQ8NGU4 316 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 PLA2G2FQ9BZM2 168 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 IFITM5A6NNB3 132 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 ALG1L2C9J202 215 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 HPP00738 406 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 GP2P55259 537 aaKnown RBP13.85□□□□□ -0.19
PTPRF-206ENST00000429895 BTG1P62324 171 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 Q6ZNB5 142 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 NPEPL1Q8NDH3 523 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 ARHGDIGQ99819 225 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 PIGMQ9H3S5 423 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 IGLV3-27P01718 113 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 IL5P05113 134 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 GUCA2AQ02747 115 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 CDK5R1Q15078 307 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 OTUD1Q5VV17 481 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-206ENST00000429895 DND1Q8IYX4 353 aaKnown RBP13.85□□□□□ -0.19
PTPRF-206ENST00000429895 RPEQ96AT9 228 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 SMIM7Q9BQ49 75 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 MYOZ1Q9NP98 299 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-206ENST00000429895 TMEM30AQ9NV96 361 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 TMEM30CPA0ZSE6 113 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 GPANK1O95872 356 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 CA6P23280 308 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 RPL13AP40429 203 aaKnown RBP13.85□□□□□ -0.19
PTPRF-206ENST00000429895 MICBQ29980 383 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 C20orf196Q8IYI0 205 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 RELL2Q8NC24 303 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-206ENST00000429895 CNRIP1Q96F85 164 aaPredicted RBP13.85□□□□□ -0.19
PTPRF-206ENST00000429895 DUS3LQ96G46 650 aaKnown RBP13.85□□□□□ -0.19
PTPRF-206ENST00000429895 KCNE3Q9Y6H6 103 aa13.85□□□□□ -0.19
PTPRF-206ENST00000429895 RRASP10301 218 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 OR5AP2Q8NGF4 316 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 OR52N4Q8NGI2 321 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 MYH4Q9Y623 1939 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 HMX2A2RU54 273 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 OR2F1Q13607 317 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 OR4S1Q8NGB4 309 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 RTN4IP1Q8WWV3 396 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-206ENST00000429895 CLDN23Q96B33 292 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 GABARAPL3Q9BY60 117 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 TBX21Q9UL17 535 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 ANKRD53Q8N9V6 530 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 EXTL1Q92935 676 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 GAL3ST2Q9H3Q3 398 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 ADGRL4Q9HBW9 690 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 MBP02144 154 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 CCL2P13500 99 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 ABCD3P28288 659 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 TMEM267Q0VDI3 215 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-206ENST00000429895 ENDOGQ14249 297 aaKnown RBP13.84□□□□□ -0.19
PTPRF-206ENST00000429895 HFEQ30201 348 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 NT5CQ8TCD5 201 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 ADGRG7Q96K78 797 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 FBXO34Q9NWN3 711 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 SCN11AQ9UI33 1791 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 NUP98P52948 1817 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 F5H697 171 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 DNASE2O00115 360 aaPredicted RBP13.84□□□□□ -0.19
PTPRF-206ENST00000429895 CYC1P08574 325 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 PTBP1P26599 531 aaKnown RBP eCLIP13.84□□□□□ -0.194e-7■■■■□ 23.8
PTPRF-206ENST00000429895 OPRK1P41145 380 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 CNN1P51911 297 aaKnown RBP13.84□□□□□ -0.19
PTPRF-206ENST00000429895 SLC36A1Q7Z2H8 476 aa13.84□□□□□ -0.19
PTPRF-206ENST00000429895 KRASP01116 189 aa13.83□□□□□ -0.19
PTPRF-206ENST00000429895 DCTDP32321 178 aa13.83□□□□□ -0.19
PTPRF-206ENST00000429895 CEACAM6P40199 344 aa13.83□□□□□ -0.19
PTPRF-206ENST00000429895 ACVR1Q04771 509 aa13.83□□□□□ -0.19
PTPRF-206ENST00000429895 ICAM5Q9UMF0 924 aa13.83□□□□□ -0.19
PTPRF-206ENST00000429895 LRP12Q9Y561 859 aa13.83□□□□□ -0.19
PTPRF-206ENST00000429895 LYZL6O75951 148 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 IGHV3-13P01766 116 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 IGHV3-7P01780 117 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 OR3A4PP47883 348 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 AQP6Q13520 282 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 SPINK9Q5DT21 86 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 SLC38A6Q8IZM9 456 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 OR2G2Q8NGZ5 317 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 TTC9Q92623 222 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 A0A0A6YYD5 115 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 JUNBP17275 347 aaPredicted RBP13.83□□□□□ -0.2
PTPRF-206ENST00000429895 DDOSTP39656 456 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 TIGD3Q6B0B8 471 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 ACSM6Q6P461 480 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 LYG1Q8N1E2 194 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 TNFRSF12AQ9NP84 129 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 RGPD5Q99666 1765 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 IGHV3-43A0A0B4J1X8 118 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 ZNF320A2RRD8 509 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 RFPL4AA6NLU0 287 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 RFPL4AL1F8VTS6 287 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 IGHV3-43DP0DP04 118 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 OR4C3Q8NH37 302 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 C2orf50Q96LR7 162 aa13.83□□□□□ -0.2
PTPRF-206ENST00000429895 RBM14Q96PK6 669 aaKnown RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms