RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 LRRTM1Q86UE6 522 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 PELI3Q8N2H9 469 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 PP6455Q8WZ26 134 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 CXorf36Q9H7Y0 433 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 IL36GQ9NZH8 169 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 C19orf53Q9UNZ5 99 aaPredicted RBP6.21□□□□□ -1.42
SCN1A-204ENST00000423058 STRCQ7RTU9 1775 aa6.21□□□□□ -1.42
SCN1A-204ENST00000423058 K7ESF4 209 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 UBE2L6O14933 153 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TMIGD3P0DMS9 266 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SLC25A4P12235 298 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ARRB2P32121 409 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 CASP3P42574 277 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF816Q0VGE8 651 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TRIP6Q15654 476 aaKnown RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF750Q32MQ0 723 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 LEXMQ3ZCV2 418 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 OR4A4PQ8NGN8 299 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 OR13D1Q8NGV5 346 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 LHX4Q969G2 390 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SPACA9Q96E40 222 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 POMT1Q9Y6A1 747 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 PLXNA1Q9UIW2 1896 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 A0A1W2PPC4 97 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 MASP2O00187 686 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SP1P08047 785 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SHC1P29353 583 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 FCGR2CP31995 323 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 KCNJ3P48549 501 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF154Q13106 437 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF141Q15928 474 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 DUSP5Q16690 384 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 DHRS11Q6UWP2 260 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SIAH3Q8IW03 269 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ANGPTL6Q8NI99 470 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 C14orf79Q96F83 325 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 UBQLN3Q9H347 655 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ICAM5Q9UMF0 924 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 IGHV3-15A0A0B4J1V0 119 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 LILRA5A6NI73 299 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 UMAD1C9J7I0 102 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 GCGP01275 180 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 LIMS3P0CW19 117 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 LIMS4P0CW20 117 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 BTN1A1Q13410 526 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM81Q6P7N7 255 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ZFP62Q8NB50 900 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 OR5M8Q8NGP6 311 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 OR4C3Q8NH37 302 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 CCL17Q92583 94 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 Q96M85 177 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 LPAR3Q9UBY5 353 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 KRBA1A5PL33 1030 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SBK2P0C263 348 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 OR4A8P0C604 315 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 MYOGP15173 224 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ZNF121P58317 390 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 PPP1CBP62140 327 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 HAGHQ16775 308 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM240Q5SV17 173 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 DHRS4L2Q6PKH6 230 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 LYSMD2Q8IV50 215 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 NOXO1Q8NFA2 376 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 C3orf30Q96M34 536 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 VPS25Q9BRG1 176 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 PBOV1Q9GZY1 135 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 C12orf10Q9HB07 376 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TNFRSF19Q9NS68 423 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 CA10Q9NS85 328 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TCRBP04435 133 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 ALPLP05186 524 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 PSMB2P49721 201 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 CCR9P51686 369 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 P2RX3P56373 397 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TPPP2P59282 170 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 PFN3P60673 137 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SLC35B1P78383 322 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SYT14P1Q58G82 188 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 CYHR1Q6ZMK1 362 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM174Q8WUU8 243 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM18Q96B42 140 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 LURAP1Q96LR2 239 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 HAPLN2Q9GZV7 340 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SERPINE3A8MV23 424 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 HIST1H1EP10412 219 aaKnown RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 EPXP11678 715 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 KIR3DL2P43630 455 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SPCS3P61009 180 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 TMEM268Q5VZI3 342 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SAXO2Q658L1 398 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 BCL7CQ8WUZ0 217 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 COPS9Q8WXC6 57 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 SDF2Q99470 211 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 PKMYT1Q99640 499 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 FAM103A1Q9BTL3 118 aaKnown RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 GPR87Q9BY21 358 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 NRSN2Q9GZP1 204 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 CHST6Q9GZX3 395 aa6.2□□□□□ -1.42
SCN1A-204ENST00000423058 RANGRFQ9HD47 186 aaPredicted RBP6.2□□□□□ -1.42
SCN1A-204ENST00000423058 CGGBP1Q9UFW8 167 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms