RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 SLC25A40Q8TBP6 338 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 FOXRED1Q96CU9 486 aaPredicted RBP14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 KCTD12Q96CX2 325 aaKnown RBP14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 CPNE2Q96FN4 548 aaPredicted RBP14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 TECTBQ96PL2 329 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 OR2J1Q9GZK6 312 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 POFUT1Q9H488 388 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 PEX16Q9Y5Y5 336 aa14.76□□□□□ -0.05
CCDC28B-202ENST00000421922 A0A075B6Q4 140 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ANKRD30BLA7E2S9 258 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 AIPO00170 330 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ZG16O60844 167 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 TMEM127O75204 238 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 EPXP11678 715 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ACKR3P25106 362 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 CD40P25942 277 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 SNTB2Q13425 540 aaKnown RBP14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ZNF718Q3SXZ3 478 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 FBXW12Q6X9E4 464 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 OR51A2Q8NGJ7 313 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 PIGCQ92535 297 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 WFIKKN1Q96NZ8 548 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 GPER1Q99527 375 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 PAPOLGQ9BWT3 736 aaKnown RBP14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 GPR173Q9NS66 373 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 PLEKHB1Q9UF11 243 aaPredicted RBP14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ADAM30Q9UKF2 790 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 SLC7A11Q9UPY5 501 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 A0A0G2JK05 382 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 IFITM5A6NNB3 132 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 CD300LBA8K4G0 201 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 NRASP01111 189 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 RAC2P15153 192 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ADRA2CP18825 462 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ATF1P18846 271 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 RAB11BQ15907 218 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 PLCXD3Q63HM9 321 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 RGS7BPQ6MZT1 257 aaPredicted RBP14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 PNLDC1Q8NA58 520 aaKnown RBP14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 NPRL2Q8WTW4 380 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 CMBLQ96DG6 245 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 SORCS2Q96PQ0 1159 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 HIST1H2AAQ96QV6 131 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 MRI1Q9BV20 369 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 NXF2Q9GZY0 626 aaKnown RBP14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ESRP2Q9H6T0 727 aaKnown RBP14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 ABRACLQ9P1F3 81 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 COMMD3Q9UBI1 195 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 PMF1-BGLAPU3KQ54 211 aa14.75□□□□□ -0.05
CCDC28B-202ENST00000421922 PRR14LQ5THK1 2151 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 PTPN13Q12923 2485 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 TUBAL3A6NHL2 446 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 THBDP07204 575 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 SLC2A2P11168 524 aaPredicted RBP14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 PRKACBP22694 351 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 ERVS71-1P61550 626 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 LSAMPQ13449 338 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 ASPHD2Q6ICH7 369 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 OR2T2Q6IF00 324 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 SEZ6L2Q6UXD5 910 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 MOB3CQ70IA8 216 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 NR2C2APQ86WQ0 139 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 BHLHE23Q8NDY6 225 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 ITLN2Q8WWU7 325 aaPredicted RBP14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 PIGTQ969N2 578 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 SPSB1Q96BD6 273 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 STEAP1Q9UHE8 339 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 POU2F3Q9UKI9 436 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 CMAHPQ9Y471 501 aa14.74□□□□□ -0.05
CCDC28B-202ENST00000421922 ATP6V1G2-DDX39BF2Z307 99 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 TIMM8AO60220 97 aaPredicted RBP14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 ALX3O95076 343 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 AZGP1P25311 298 aaKnown RBP14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 ZNF93P35789 620 aaPredicted RBP14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 BMXP51813 675 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 SELENOVP59797 346 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 DYNC1I2Q13409 638 aaKnown RBP14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 SLC22A25Q6T423 547 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 LINC00299Q6ZSB3 139 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 ZDHHC23Q8IYP9 409 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 OR6M1Q8NGM8 313 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 TRMT10AQ8TBZ6 339 aaKnown RBP14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 TBC1D15Q8TC07 691 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 KLF14Q8TD94 323 aaPredicted RBP14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 BORCS8Q96FH0 119 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 SLC30A2Q9BRI3 323 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 METTL17Q9H7H0 456 aaPredicted RBP14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 ABCB9Q9NP78 766 aa14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 CGGBP1Q9UFW8 167 aaPredicted RBP14.73□□□□□ -0.05
CCDC28B-202ENST00000421922 ZNF850A8MQ14 1090 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 SLC17A2O00624 439 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 ABCD4O14678 606 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 GMDSO60547 372 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 ALDOBP05062 364 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 HTR2CP28335 458 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 PEX19P40855 299 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 CAPZA1P52907 286 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 BSPH1Q075Z2 132 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 PRDX4Q13162 271 aa14.72□□□□□ -0.05
CCDC28B-202ENST00000421922 TNK1Q13470 666 aa14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms