RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 OTX1P32242 354 aaPredicted RBP7.34□□□□□ -1.23
USP54-203ENST00000418501 PTGFRP43088 359 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 GLP1RP43220 463 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 GMFBP60983 142 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 KISS1Q15726 138 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 C9orf135Q5VTT2 229 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 Q6ZTK2 550 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 IQCF2Q8IXL9 164 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 Q8IYB0 196 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 OR10AC1Q8NH08 325 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 ASB13Q8WXK3 278 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 FBXO17Q96EF6 278 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 GPR137Q96N19 417 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 MTFP1Q9UDX5 166 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 NHLH1Q02575 133 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 SLC22A6Q4U2R8 563 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 OR51A4Q8NGJ6 313 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 CHST6Q9GZX3 395 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 MGAT4AQ9UM21 535 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 BPTFQ12830 3046 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 FER1L5A0AVI2 2057 aa7.34□□□□□ -1.23
USP54-203ENST00000418501 A0A096LPE4 126 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 A0A1W2PPZ6 126 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 B4DXG7 233 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 CA11O75493 328 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 AMY2BP19961 511 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 ARPC4P59998 168 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 RBM39Q14498 530 aaKnown RBP7.34□□□□□ -1.24
USP54-203ENST00000418501 PLEKHN1Q494U1 663 aaPredicted RBP7.34□□□□□ -1.24
USP54-203ENST00000418501 CHRFAM7AQ494W8 412 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 CDNFQ49AH0 187 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 FAM209AQ5JX71 171 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 BTLAQ7Z6A9 289 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 OR52I2Q8NH67 350 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 NEK7Q8TDX7 302 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 C1QTNF5Q9BXJ0 243 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 RIMS4Q9H426 269 aaPredicted RBP7.34□□□□□ -1.24
USP54-203ENST00000418501 PLEKHJ1Q9NW61 149 aa7.34□□□□□ -1.24
USP54-203ENST00000418501 BRCA2P51587 3418 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 SHISA3A0PJX4 238 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 DVL2O14641 736 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 CREBL2O60519 120 aaPredicted RBP7.33□□□□□ -1.24
USP54-203ENST00000418501 PEX14O75381 377 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 TCRBP04435 133 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 CBR1P16152 277 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 CRYGSP22914 178 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 OLFML2AQ68BL7 652 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 GFRALQ6UXV0 394 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 SAXO1Q8IYX7 474 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 OR5H2Q8NGV7 314 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 YIPF5Q969M3 257 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 SCNM1Q9BWG6 230 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 PPIL3Q9H2H8 161 aaKnown RBP7.33□□□□□ -1.24
USP54-203ENST00000418501 CNTD2Q9H8S5 307 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 CHMP1AQ9HD42 196 aaPredicted RBP7.33□□□□□ -1.24
USP54-203ENST00000418501 PNRC2Q9NPJ4 139 aaKnown RBP7.33□□□□□ -1.24
USP54-203ENST00000418501 DKK4Q9UBT3 224 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 A0A1B0GTI1 187 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAHP16930 419 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 RFX2P48378 723 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 VEGFCP49767 419 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 DGCR2P98153 550 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 MADCAM1Q13477 382 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 PHYHD1Q5SRE7 291 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 OTPQ5XKR4 325 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 STEAP1BQ6NZ63 245 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 LINC00596Q86U02 117 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 OR52N4Q8NGI2 321 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 OR10S1Q8NGN2 331 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 SGK3Q96BR1 496 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 ADAT3Q96EY9 351 aaPredicted RBP7.33□□□□□ -1.24
USP54-203ENST00000418501 RAB9BQ9NP90 201 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 GPR173Q9NS66 373 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 CLCF1Q9UBD9 225 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A10PA6NDY2 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A18PA6NE21 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A16PA6NEW6 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A20PA6NIJ5 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A8PA6NJQ4 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A7PA6NKC0 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A22PA8MWA6 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A12PA8MX19 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A5PA8MXJ8 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A23PA8MXZ1 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A15PP0C7V4 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A13PP0C7W8 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A14PP0C7W9 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 FAM90A24PP0C7X0 464 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 ZNF718Q3SXZ3 478 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 ACSF3Q4G176 576 aaPredicted RBP7.33□□□□□ -1.24
USP54-203ENST00000418501 TRAPPC6BQ86SZ2 158 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 ACBD4Q8NC06 268 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 PXT1Q8NFP0 134 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 BCL2L2Q92843 193 aaPredicted RBP7.33□□□□□ -1.24
USP54-203ENST00000418501 SPRR3Q9UBC9 169 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 GPR179Q6PRD1 2367 aa7.33□□□□□ -1.24
USP54-203ENST00000418501 ANKRD20A5PA0PJZ0 165 aa7.32□□□□□ -1.24
USP54-203ENST00000418501 HLA-HP01893 362 aa7.32□□□□□ -1.24
USP54-203ENST00000418501 ADRA2CP18825 462 aa7.32□□□□□ -1.24
USP54-203ENST00000418501 BHLHA15Q7RTS1 189 aaPredicted RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms