RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 PNRC2Q9NPJ4 139 aaKnown RBP13.02□□□□□ -0.33
USP4-203ENST00000415188 CA10Q9NS85 328 aa13.02□□□□□ -0.33
USP4-203ENST00000415188 HIVEP3Q5T1R4 2406 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 TMEM82A0PJX8 343 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 TMEM14DPA8MWL7 114 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 ZNF814B7Z6K7 855 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 F5H5P2 479 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 L7N2F9 121 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 RAB27BO00194 218 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 AMY2AP04746 511 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 MSR1P21757 451 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 GUCA1AP43080 201 aaPredicted RBP13.01□□□□□ -0.33
USP4-203ENST00000415188 OR3A3P47888 321 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 CLDN17P56750 224 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 ZNF121P58317 390 aaPredicted RBP13.01□□□□□ -0.33
USP4-203ENST00000415188 PRAMEF20Q5VT98 475 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 LPCAT3Q6P1A2 487 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 IDO2Q6ZQW0 420 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 LINC00696Q6ZRV3 163 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 OR52N4Q8NGI2 321 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 OR5M1Q8NGP8 315 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 TNFAIP8L1Q8WVP5 186 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 SGCZQ96LD1 299 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 DPCDQ9BVM2 203 aaPredicted RBP13.01□□□□□ -0.33
USP4-203ENST00000415188 GLTPQ9NZD2 209 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 OPN4Q9UHM6 478 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 DKKL1Q9UK85 242 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 MAB21L2Q9Y586 359 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 CNTRLQ7Z7A1 2325 aa13.01□□□□□ -0.33
USP4-203ENST00000415188 KIAA1549Q9HCM3 1950 aa13□□□□□ -0.33
USP4-203ENST00000415188 NSG1A0A0A6YYJ2 146 aa13□□□□□ -0.33
USP4-203ENST00000415188 A1L4Q6 167 aa13□□□□□ -0.33
USP4-203ENST00000415188 MEIS3P1A6NDR6 274 aa13□□□□□ -0.33
USP4-203ENST00000415188 APOC1P02654 83 aa13□□□□□ -0.33
USP4-203ENST00000415188 CELA2AP08217 269 aa13□□□□□ -0.33
USP4-203ENST00000415188 ZNF735P0CB33 412 aa13□□□□□ -0.33
USP4-203ENST00000415188 NFYAP23511 347 aaPredicted RBP13□□□□□ -0.33
USP4-203ENST00000415188 ZNF93P35789 620 aaPredicted RBP13□□□□□ -0.33
USP4-203ENST00000415188 SUCLG1P53597 346 aaKnown RBP13□□□□□ -0.33
USP4-203ENST00000415188 GMFBP60983 142 aa13□□□□□ -0.33
USP4-203ENST00000415188 OPCMLQ14982 345 aa13□□□□□ -0.33
USP4-203ENST00000415188 CARD17Q5XLA6 110 aa13□□□□□ -0.33
USP4-203ENST00000415188 RPS19BP1Q86WX3 136 aaKnown RBP13□□□□□ -0.33
USP4-203ENST00000415188 MUC20Q8N307 709 aaPredicted RBP13□□□□□ -0.33
USP4-203ENST00000415188 BPIFB2Q8N4F0 458 aa13□□□□□ -0.33
USP4-203ENST00000415188 ZDHHC22Q8N966 263 aa13□□□□□ -0.33
USP4-203ENST00000415188 OR8B12Q8NGG6 310 aa13□□□□□ -0.33
USP4-203ENST00000415188 OR13C9Q8NGT0 318 aa13□□□□□ -0.33
USP4-203ENST00000415188 OR8S1Q8NH09 359 aa13□□□□□ -0.33
USP4-203ENST00000415188 OR51E1Q8TCB6 317 aa13□□□□□ -0.33
USP4-203ENST00000415188 HPF1Q9NWY4 346 aa13□□□□□ -0.33
USP4-203ENST00000415188 ASH2LQ9UBL3 628 aa13□□□□□ -0.33
USP4-203ENST00000415188 TMEM235A6NFC5 223 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 CBR3O75828 277 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 MPC2O95563 127 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 GSTP1P09211 210 aaKnown RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 VSIG8P0DPA2 414 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 CCL3P10147 92 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 ICAM2P13598 275 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 CX3CR1P49238 355 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 RAB14P61106 215 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 RAC1P63000 192 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 UNC119Q13432 240 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 EXOSC2Q13868 293 aaKnown RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 ZNF169Q14929 603 aaPredicted RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 GRK1Q15835 563 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 MOGAT2Q3SYC2 334 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 C4orf46Q504U0 113 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 RNASE10Q5GAN6 216 aaKnown RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 CLVS2Q5SYC1 327 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 AWAT2Q6E213 333 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 CHMP1BQ7LBR1 199 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 ABHD12BQ7Z5M8 362 aaPredicted RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 FJX1Q86VR8 437 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 OR8H3Q8N146 312 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 PAQR4Q8N4S7 273 aaPredicted RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 TMEM156Q8N614 296 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 ZNF283Q8N7M2 679 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 ACBD4Q8NC06 268 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 GJC3Q8NFK1 279 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 OR52B4Q8NGK2 314 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 KCNG3Q8TAE7 436 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 DVL3Q92997 716 aaPredicted RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 ELMOD3Q96FG2 381 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 PIGQQ9BRB3 760 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 SF3B5Q9BWJ5 86 aaKnown RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 NELFAQ9H3P2 528 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 POFUT1Q9H488 388 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 CDCP1Q9H5V8 836 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 PROK2Q9HC23 129 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 ERRFI1Q9UJM3 462 aaPredicted RBP12.99□□□□□ -0.33
USP4-203ENST00000415188 PLEKHA6Q9Y2H5 1048 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 EML6Q6ZMW3 1958 aa12.99□□□□□ -0.33
USP4-203ENST00000415188 LEUTXA8MZ59 168 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 MCRIP1C9JLW8 97 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 NPIPA2E9PIF3 369 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 NPIPA3F8WFD2 350 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 GOSR2O14653 212 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 ZIC3O60481 467 aa12.98□□□□□ -0.33
USP4-203ENST00000415188 RAMP1O60894 148 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms