RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 CHRM2P08172 466 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 FCGR2AP12318 317 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 ANXA7P20073 488 aaKnown RBP18.06■□□□□ 0.48
USP39-203ENST00000409470 PMP22Q01453 160 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 FJX1Q86VR8 437 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 ZNF584Q8IVC4 421 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 ZNF100Q8IYN0 542 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 WDYHV1Q96HA8 205 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 NICN1Q9BSH3 213 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 TMEM59Q9BXS4 323 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 SELENOIQ9C0D9 397 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 LPAR5Q9H1C0 372 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 SPRR3Q9UBC9 169 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 KLK13Q9UKR3 277 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 CELSR3Q9NYQ7 3312 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 PTPRBP23467 1997 aa18.06■□□□□ 0.48
USP39-203ENST00000409470 RPL36A-HNRNPH2H7BZ11 118 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 CEACAM1P13688 526 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 GNB3P16520 340 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 ZNF24P17028 368 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 ERP29P30040 261 aaKnown RBP18.05■□□□□ 0.48
USP39-203ENST00000409470 HOXD11P31277 338 aaPredicted RBP18.05■□□□□ 0.48
USP39-203ENST00000409470 PTGFRP43088 359 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 GSK3AP49840 483 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 RIPPLY1Q0D2K3 151 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 STK11Q15831 433 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 SLC22A6Q4U2R8 563 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 TRAPPC6BQ86SZ2 158 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 PIGTQ969N2 578 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 MS4A3Q96HJ5 214 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 NUDT16L1Q9BRJ7 211 aaKnown RBP18.05■□□□□ 0.48
USP39-203ENST00000409470 ZDHHC11Q9H8X9 412 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 ING4Q9UNL4 249 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 DHRS7CA6NNS2 312 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 ZNF736B4DX44 427 aaPredicted RBP18.05■□□□□ 0.48
USP39-203ENST00000409470 PYCARD-AS1I3L0S3 204 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 CXCL3P19876 107 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 ACKR3P25106 362 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 NBL1P41271 181 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 GZMKP49863 264 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 GLDNQ6ZMI3 551 aaPredicted RBP18.05■□□□□ 0.48
USP39-203ENST00000409470 TNFAIP8L1Q8WVP5 186 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 PRRX2Q99811 253 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 SEC22CQ9BRL7 303 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 GPR173Q9NS66 373 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 BOLA1Q9Y3E2 137 aa18.05■□□□□ 0.48
USP39-203ENST00000409470 A0A1W2PP11 408 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 M0QYG6 137 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 ANXA3P12429 323 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 CPN1P15169 458 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 FAPQ12884 760 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 FAM189A2Q15884 450 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 NUFIP2Q7Z417 695 aaKnown RBP18.04■□□□□ 0.48
USP39-203ENST00000409470 S100A13Q99584 98 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 URM1Q9BTM9 101 aaKnown RBP18.04■□□□□ 0.48
USP39-203ENST00000409470 CST11Q9H112 138 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 GPN1Q9HCN4 374 aaPredicted RBP18.04■□□□□ 0.48
USP39-203ENST00000409470 GHRLQ9UBU3 117 aa18.04■□□□□ 0.48
USP39-203ENST00000409470 ZNF107Q9UII5 783 aaPredicted RBP18.04■□□□□ 0.48
USP39-203ENST00000409470 RLN1P04808 185 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 MELTFP08582 738 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 SULT1A3P0DMM9 295 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 SULT1A4P0DMN0 295 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 FOXG1P55316 489 aaPredicted RBP18.03■□□□□ 0.48
USP39-203ENST00000409470 IFITM2Q01629 132 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 LIX1LQ8IVB5 337 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 CPEB3Q8NE35 698 aaKnown RBP18.03■□□□□ 0.48
USP39-203ENST00000409470 NUDCD2Q8WVJ2 157 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 ZNF391Q9UJN7 358 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 FREM1Q5H8C1 2179 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 A0A0A6YYD4 124 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 FABP7O15540 132 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 PRSS12P56730 875 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 CDK10Q15131 360 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 DEFB109BQ30KR1 87 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 RAB3CQ96E17 227 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 TINAGL1Q9GZM7 467 aaPredicted RBP18.03■□□□□ 0.48
USP39-203ENST00000409470 RGCCQ9H4X1 137 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 PLSCR3Q9NRY6 295 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 ZNF69Q9UC07 566 aa18.03■□□□□ 0.48
USP39-203ENST00000409470 SLC22A20A6NK97 555 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 SOCS1O15524 211 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 ATP6V1G1O75348 118 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 AMY2AP04746 511 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 IL5P05113 134 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 MECP2P51608 486 aaKnown RBP18.02■□□□□ 0.48
USP39-203ENST00000409470 CRIP3Q6Q6R5 217 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 C1QL2Q7Z5L3 287 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 OR56B1Q8NGI3 324 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 MED30Q96HR3 178 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 C12orf49Q9H741 205 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 ELL3Q9HB65 397 aaPredicted RBP18.02■□□□□ 0.48
USP39-203ENST00000409470 IFT46Q9NQC8 304 aa18.02■□□□□ 0.48
USP39-203ENST00000409470 HLA-HP01893 362 aa18.01■□□□□ 0.47
USP39-203ENST00000409470 SF3B4Q15427 424 aaKnown RBP eCLIP18.01■□□□□ 0.473e-14■■■■■ 33.9
USP39-203ENST00000409470 PIAS4Q8N2W9 510 aaPredicted RBP18.01■□□□□ 0.47
USP39-203ENST00000409470 OR4S1Q8NGB4 309 aa18.01■□□□□ 0.47
USP39-203ENST00000409470 OR51T1Q8NGJ9 327 aa18.01■□□□□ 0.47
USP39-203ENST00000409470 FAM172BPA6NC97 362 aa18.01■□□□□ 0.47
USP39-203ENST00000409470 CREBL2O60519 120 aaPredicted RBP18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms