RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 CCL2P13500 99 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 SCAND1P57086 179 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 RIPPLY1Q0D2K3 151 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM155Q4W5P6 130 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 C1orf100Q5SVJ3 147 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 SEMA6DQ8NFY4 1073 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 OR13F1Q8NGS4 319 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 HPS1Q92902 700 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 MEGF10Q96KG7 1140 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 OR5M11Q96RB7 305 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 CXorf56Q9H5V9 222 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 ERGIC3Q9Y282 383 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 POLR1DQ9Y2S0 133 aa5.94□□□□□ -1.46
LIMA1-202ENST00000394943 A0A087WXM4 84 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 IGKV1-9A0A0C4DH69 117 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 LOC107986453A0A1B0GWG9 222 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 LRP5LA4QPB2 252 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 POM121CA8CG34 1229 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 PIN1P1O15428 100 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 LILRA1O75019 489 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 IGHV2-70P01814 119 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 IGHV4-39P01824 125 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 KRT80Q6KB66 452 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 AHSA2Q719I0 299 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 FAM57BQ71RH2 274 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 MRI1Q9BV20 369 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 GPR84Q9NQS5 396 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 HHLA2Q9UM44 414 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 A1L4Q6 167 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 NCR1O76036 304 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 KDM4BO94953 1096 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 ATF1P18846 271 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 COL8A1P27658 744 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 PMELP40967 661 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 SNRPD2P62316 118 aaKnown RBP5.93□□□□□ -1.46
LIMA1-202ENST00000394943 SNTB1Q13884 538 aaKnown RBP5.93□□□□□ -1.46
LIMA1-202ENST00000394943 ALKBH6Q3KRA9 238 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 Q499Y3 187 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 OR2G6Q5TZ20 316 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 HIST2H2ABQ8IUE6 130 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-202ENST00000394943 STX19Q8N4C7 294 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 PXT1Q8NFP0 134 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 OR5AK2Q8NH90 309 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 C10orf105Q8TEF2 133 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 ZC3HAV1LQ96H79 300 aaKnown RBP5.93□□□□□ -1.46
LIMA1-202ENST00000394943 PGAM5Q96HS1 289 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 SORCS2Q96PQ0 1159 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 CCL19Q99731 98 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM100Q9NV29 134 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 TMEM160Q9NX00 188 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 TAAR3PQ9P1P4 343 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 GNG8Q9UK08 70 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 YLPM1P49750 1951 aaKnown RBP5.93□□□□□ -1.46
LIMA1-202ENST00000394943 LOC100289279A0A1B0GTE1 492 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 F5H5K5 113 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 M0R233 179 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 SERPINA3P01011 423 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 LOXL1Q08397 574 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-202ENST00000394943 CEP78Q5JTW2 689 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 OTPQ5XKR4 325 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 POC1AQ8NBT0 407 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 RDH5Q92781 318 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 YIPF5Q969M3 257 aa5.93□□□□□ -1.46
LIMA1-202ENST00000394943 C1orf147Q96MC9 270 aaPredicted RBP5.93□□□□□ -1.46
LIMA1-202ENST00000394943 ANK3Q12955 4377 aaKnown RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PPIAL4EA0A075B759 164 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PPIAL4CA0A0B4J2A2 164 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 FOXI3A8MTJ6 420 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PPIAL4DF5H284 164 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 LDLRAD4O15165 306 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 LCATP04180 440 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PPIAL4FP0DN26 164 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 FOSL1P15407 271 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 DNASE1P24855 282 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 GCH1P30793 250 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 FUT6P51993 359 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 OR51E1Q8TCB6 317 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ADAT3Q96EY9 351 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 UQCC2Q9BRT2 126 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 SOX7Q9BT81 388 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 CHODLQ9H9P2 273 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 PMF1-BGLAPU3KQ54 211 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ASH1LQ9NR48 2969 aaKnown RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 CNTRLQ7Z7A1 2325 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 SRRM5B3KS81 715 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF879B4DU55 563 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF701M0R085 212 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 SLC25A16P16260 332 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 MAPK3P27361 379 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 RANBP1P43487 201 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 ZNF81P51508 661 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 BMXP51813 675 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 QRFPP83859 136 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 HLXQ14774 488 aaPredicted RBP5.92□□□□□ -1.46
LIMA1-202ENST00000394943 UBE2V2Q15819 145 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 LHFPL2Q6ZUX7 228 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 CDH24Q86UP0 819 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 SERPINA12Q8IW75 414 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 GAPTQ8N292 157 aa5.92□□□□□ -1.46
LIMA1-202ENST00000394943 FTMTQ8N4E7 242 aa5.92□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms