RNA–Protein interactions for RNA: ENST00000389589.8

SHOX2-201, Transcript of short stature homeobox 2, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SHOX2, Length 2,072 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2-201ENST00000389589 CHST4Q8NCG5 386 aa21.93■■□□□ 1.1
SHOX2-201ENST00000389589 OR10R2Q8NGX6 335 aa21.93■■□□□ 1.1
SHOX2-201ENST00000389589 CPNE2Q96FN4 548 aaPredicted RBP21.93■■□□□ 1.1
SHOX2-201ENST00000389589 CST11Q9H112 138 aa21.93■■□□□ 1.1
SHOX2-201ENST00000389589 OR51J1Q9H342 316 aa21.93■■□□□ 1.1
SHOX2-201ENST00000389589 GVINP1Q7Z2Y8 2422 aa21.93■■□□□ 1.1
SHOX2-201ENST00000389589 MEIS3P1A6NDR6 274 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 NDUFB6O95139 128 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 ACKR3P25106 362 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 VEGFCP49767 419 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 FOXG1P55316 489 aaPredicted RBP21.92■■□□□ 1.1
SHOX2-201ENST00000389589 TMEM53Q6P2H8 277 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 GIMAP1Q8WWP7 306 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 RNF170Q96K19 258 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 TMEM59Q9BXS4 323 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 LPAR5Q9H1C0 372 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 NOX3Q9HBY0 568 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 NKIRAS2Q9NYR9 191 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 FAM186AA6NE01 2351 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 MPIG6BO95866 241 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 NAT2P11245 290 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 STOMP27105 288 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 MPGP29372 298 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 RCVRNP35243 200 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 CNN3Q15417 329 aaKnown RBP21.92■■□□□ 1.1
SHOX2-201ENST00000389589 RSPO4Q2I0M5 234 aaPredicted RBP21.92■■□□□ 1.1
SHOX2-201ENST00000389589 LINC00303Q3SY05 128 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 CDNFQ49AH0 187 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 FBXW9Q5XUX1 488 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 FAAP20Q6NZ36 180 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 URM1Q9BTM9 101 aaKnown RBP21.92■■□□□ 1.1
SHOX2-201ENST00000389589 C12orf49Q9H741 205 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 B3GNT2Q9NY97 397 aa21.92■■□□□ 1.1
SHOX2-201ENST00000389589 TMEM235A6NFC5 223 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 HLA-HP01893 362 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 PRKACBP22694 351 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 OR3A2P47893 321 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 STEAP1BQ6NZ63 245 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 ZNF782Q6ZMW2 699 aaPredicted RBP21.91■■□□□ 1.1
SHOX2-201ENST00000389589 COLCA1Q6ZS62 124 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 GABRG1Q8N1C3 465 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 NPRL2Q8WTW4 380 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 SPSB4Q96A44 273 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 FYTTD1Q96QD9 318 aaKnown RBP21.91■■□□□ 1.1
SHOX2-201ENST00000389589 TP63Q9H3D4 680 aaPredicted RBP21.91■■□□□ 1.1
SHOX2-201ENST00000389589 ZMAT3Q9HA38 289 aaKnown RBP21.91■■□□□ 1.1
SHOX2-201ENST00000389589 CLCF1Q9UBD9 225 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 PRSS50Q9UI38 385 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 hCG_38984A0A1B0GV85 526 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 SS18L1O75177 396 aaPredicted RBP21.91■■□□□ 1.1
SHOX2-201ENST00000389589 KCNJ8Q15842 424 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 CLVS2Q5SYC1 327 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 CD276Q5ZPR3 534 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 CRIP3Q6Q6R5 217 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 IGFL3Q6UXB1 125 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 TMEM104Q8NE00 496 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 DMRTB1Q96MA1 342 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 S100A13Q99584 98 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 BEX2Q9BXY8 128 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 OR10A4Q9H209 315 aa21.91■■□□□ 1.1
SHOX2-201ENST00000389589 WIPF3A6NGB9 483 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 ICMTO60725 284 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 CYB5AP00167 134 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 CD3DP04234 171 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 FAM3AP98173 230 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 RBMS2Q15434 407 aaKnown RBP21.9■■□□□ 1.1
SHOX2-201ENST00000389589 TMEM42Q69YG0 159 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 OR56B1Q8NGI3 324 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 TNFAIP8L1Q8WVP5 186 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 SARAFQ96BY9 339 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 GPR173Q9NS66 373 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 ING4Q9UNL4 249 aa21.9■■□□□ 1.1
SHOX2-201ENST00000389589 CEP250Q9BV73 2442 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 ARPC1BO15143 372 aaKnown RBP21.89■■□□□ 1.1
SHOX2-201ENST00000389589 EFSO43281 561 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 CRTAPO75718 401 aaPredicted RBP21.89■■□□□ 1.1
SHOX2-201ENST00000389589 CD79AP11912 226 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 NKX2-5P52952 324 aaPredicted RBP21.89■■□□□ 1.1
SHOX2-201ENST00000389589 ZNF92Q03936 586 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 CBX3Q13185 183 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 TNK1Q13470 666 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 OR8B8Q15620 311 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 PIGTQ969N2 578 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 CMBLQ96DG6 245 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 POU2F3Q9UKI9 436 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 FLVCR2Q9UPI3 526 aa21.89■■□□□ 1.1
SHOX2-201ENST00000389589 LOC100509620A0A075B734 347 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 A0A1B0GUH1 482 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 EDN3P14138 238 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 MECP2P51608 486 aaKnown RBP21.89■■□□□ 1.09
SHOX2-201ENST00000389589 RAB1AP62820 205 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 PLP2Q04941 152 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 MAB21L1Q13394 359 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 ZNF169Q14929 603 aaPredicted RBP21.89■■□□□ 1.09
SHOX2-201ENST00000389589 SLC22A6Q4U2R8 563 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 ZBTB37Q5TC79 503 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 ZNF584Q8IVC4 421 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 OR1K1Q8NGR3 316 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 SELENOIQ9C0D9 397 aa21.89■■□□□ 1.09
SHOX2-201ENST00000389589 GSTP1P09211 210 aaKnown RBP21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms