RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 GGNQ86UU5 652 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 PNLDC1Q8NA58 520 aaKnown RBP18.9■□□□□ 0.62
TRIM54-202ENST00000380075 PP6455Q8WZ26 134 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 SOX7Q9BT81 388 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 FAM117AQ9C073 453 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 LPAR5Q9H1C0 372 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 IFT46Q9NQC8 304 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 LRRC3CA6NJW4 275 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 FCER2P06734 321 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 OR4E1P0C645 316 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 JMJD6Q6NYC1 403 aaPredicted RBP18.9■□□□□ 0.62
TRIM54-202ENST00000380075 YRDCQ86U90 279 aaKnown RBP18.9■□□□□ 0.62
TRIM54-202ENST00000380075 C1orf147Q96MC9 270 aaPredicted RBP18.9■□□□□ 0.62
TRIM54-202ENST00000380075 SFXN2Q96NB2 322 aa18.9■□□□□ 0.62
TRIM54-202ENST00000380075 URM1Q9BTM9 101 aaKnown RBP18.9■□□□□ 0.62
TRIM54-202ENST00000380075 A0A0G2JMM0 328 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 A0A1W2PPB8 328 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 A0A1W2PRS3 328 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 HMSDA8MTL9 139 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 KIR3DP1A8MWS1 328 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 NKX2-8O15522 239 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 MTRF1O75570 445 aaKnown RBP18.89■□□□□ 0.61
TRIM54-202ENST00000380075 ALDH3B1P43353 468 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 GPR137CQ8N3F9 429 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 ZDHHC22Q8N966 263 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 SLC6A7Q99884 636 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 TMEM59Q9BXS4 323 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 ACACBO00763 2458 aa18.89■□□□□ 0.61
TRIM54-202ENST00000380075 ANKRD11Q6UB99 2663 aaPredicted RBP18.88■□□□□ 0.61
TRIM54-202ENST00000380075 OR14I1A6ND48 311 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 LINC01387J3KSC0 135 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 M0R135 149 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 M0R233 179 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CDC14BO60729 498 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 NOS1APO75052 506 aaPredicted RBP18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CNR1P21554 472 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 SLC6A9P48067 706 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 PNLIPRP3Q17RR3 467 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 GFOD2Q3B7J2 385 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CLVS2Q5SYC1 327 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 ATP1A1-AS1Q5TC04 95 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 ATPAF1Q5TC12 328 aaPredicted RBP18.88■□□□□ 0.61
TRIM54-202ENST00000380075 ABLIM2Q6H8Q1 611 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 OR56B1Q8NGI3 324 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 OR2V1Q8NHB1 315 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CMBLQ96DG6 245 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 ZNF799Q96GE5 643 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 LYZL4Q96KX0 146 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CNTNAP3BQ96NU0 1288 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 GPER1Q99527 375 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CNTNAP3Q9BZ76 1288 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 SELENOIQ9C0D9 397 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CHST6Q9GZX3 395 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 PLEK2Q9NYT0 353 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 OR5H15A6NDH6 313 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 F5H5K5 113 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 GOSR2O14653 212 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CST2P09228 141 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 NFYAP23511 347 aaPredicted RBP18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CASRP41180 1078 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 OR3A4PP47883 348 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 RAB35Q15286 201 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 LRRC18Q8N456 261 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 C12orf45Q8N5I9 185 aaPredicted RBP18.88■□□□□ 0.61
TRIM54-202ENST00000380075 OR52H1Q8NGJ2 320 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 OR13C8Q8NGS7 320 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CPT1CQ8TCG5 803 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 ADGRG7Q96K78 797 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 DPCDQ9BVM2 203 aaPredicted RBP18.88■□□□□ 0.61
TRIM54-202ENST00000380075 CST11Q9H112 138 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 ANAPC10Q9UM13 185 aa18.88■□□□□ 0.61
TRIM54-202ENST00000380075 TPRP12270 2363 aaKnown RBP18.87■□□□□ 0.61
TRIM54-202ENST00000380075 DHRS7CA6NNS2 312 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 ZNF716A6NP11 495 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 L7N2F9 121 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 GNB3P16520 340 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 SSTR2P30874 369 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 H2BFSP57053 126 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 GMFBP60983 142 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 GRK1Q15835 563 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 ACTBL2Q562R1 376 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 LPCAT3Q6P1A2 487 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 DRAM2Q6UX65 266 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 RAB3CQ96E17 227 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 OR10A2Q9H208 303 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 UBQLN2Q9UHD9 624 aa18.87■□□□□ 0.61
TRIM54-202ENST00000380075 BOKQ9UMX3 212 aaPredicted RBP18.87■□□□□ 0.61
TRIM54-202ENST00000380075 IGKV1-9A0A0C4DH69 117 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 LINC00862A6NCI5 91 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 MPIG6BO95866 241 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 HIST1H1DP16402 221 aaKnown RBP18.86■□□□□ 0.61
TRIM54-202ENST00000380075 CXADRP78310 365 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 OPCMLQ14982 345 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 SCGB2B2Q4G0G5 96 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 PDSS1Q5T2R2 415 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 FAHD2BQ6P2I3 314 aaPredicted RBP18.86■□□□□ 0.61
TRIM54-202ENST00000380075 NAA40Q86UY6 237 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 OR4S1Q8NGB4 309 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 NUDCD2Q8WVJ2 157 aa18.86■□□□□ 0.61
TRIM54-202ENST00000380075 PSMF1Q92530 271 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms