RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 TMEM231Q9H6L2 316 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 SIAEQ9HAT2 523 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 P4HTMQ9NXG6 502 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF346Q9UL40 294 aaKnown RBP11.31□□□□□ -0.6
VPS13A-204ENST00000376634 CCDC187A0A096LP49 1063 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 F5H697 171 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 ALKBH6Q3KRA9 238 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 MOB3BQ86TA1 216 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 QSER1Q2KHR3 1735 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 RBP4P02753 201 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 OXGR1Q96P68 337 aa11.31□□□□□ -0.6
VPS13A-204ENST00000376634 FITM1A5D6W6 292 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 LIMS3P0CW19 117 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 LIMS4P0CW20 117 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 VRK3Q8IV63 474 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 DYNC2LI1Q8TCX1 351 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 A0A087WV62 115 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 MS4A18H0YCH9 400 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 GPR31O00270 319 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 TAPBPO15533 448 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 MGMTP16455 207 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 MS4A18Q3C1V0 323 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 OR2A2Q6IF42 318 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 R4GMQ9 66 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 IGHV3-20A0A0C4DH32 117 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 ACOT8O14734 319 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 GLI4P10075 376 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 B4GALT1P15291 398 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 NOVA1P51513 510 aaKnown RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 PPP2CAP67775 309 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 SLC39A13Q96H72 371 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 TOX2Q96NM4 488 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 ATP5SQ99766 215 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF121P58317 390 aaPredicted RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 C17orf99Q6UX52 265 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 SARAFQ96BY9 339 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 PELI1Q96FA3 418 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 SIPA1L3O60292 1781 aaPredicted RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 HMGN4O00479 90 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 FABP4P15090 132 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 GALR1P47211 349 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 PCDHGA9Q9Y5G4 932 aaKnown RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 TOX3O15405 576 aaPredicted RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 TMEM65Q6PI78 240 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 MISP3Q96FF7 219 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 S1PR5Q9H228 398 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 DNASE2O00115 360 aaPredicted RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 SFTA3P0C7M3 94 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 LAT2Q9GZY6 243 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 FKBP11Q9NYL4 201 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 SDCBPO00560 298 aaPredicted RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 ALX3O95076 343 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 RGS7BPQ6MZT1 257 aaPredicted RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 CLRN3Q8NCR9 226 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 DEFB108BQ8NET1 73 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 RXFP4Q8TDU9 374 aa11.3□□□□□ -0.6
VPS13A-204ENST00000376634 NXF2Q9GZY0 626 aaKnown RBP11.3□□□□□ -0.6
VPS13A-204ENST00000376634 LOC102724200A0A096LPH7 203 aaPredicted RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 PRSS37A4D1T9 235 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 OPRK1P41145 380 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 Q8IYB0 196 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 NEIL1Q96FI4 390 aaPredicted RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 MFRPQ9BY79 579 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 KIAA1324LA8MWY0 1029 aaPredicted RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 PPP1CAP62136 330 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 PAX5Q02548 391 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 FFAR4Q5NUL3 377 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 NANOGP1Q8N7R0 232 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 CMBLQ96DG6 245 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 MAGT1Q9H0U3 335 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 TXNIPQ9H3M7 391 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 UFC1Q9Y3C8 167 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 PTPRFP10586 1907 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 SEMG1P04279 462 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 CST5P28325 142 aaPredicted RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 HIST1H3AP68431 136 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 DGCR2P98153 550 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 ASTLQ6HA08 431 aaPredicted RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 EXD3Q8N9H8 876 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 LSM2Q9Y333 95 aaKnown RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 OR51B4Q9Y5P0 310 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF716A6NP11 495 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 MKRN2OSH3BPM6 223 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 HSBP1O75506 76 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 CD22P20273 847 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 KIR2DS2P43631 304 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 RPL18Q07020 188 aaKnown RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 ZNF750Q32MQ0 723 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 OR4F17Q8NGA8 305 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 PBOV1Q9GZY1 135 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 ESRP2Q9H6T0 727 aaKnown RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 H0YIG0 161 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 FZD2Q14332 565 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 TUSC5Q8IXB3 177 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 MORN4Q8NDC4 146 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 OR4S1Q8NGB4 309 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 GSX1Q9H4S2 264 aaPredicted RBP11.29□□□□□ -0.6
VPS13A-204ENST00000376634 SLC2A9Q9NRM0 540 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 TANC2Q9HCD6 1990 aa11.29□□□□□ -0.6
VPS13A-204ENST00000376634 C5orf52A6NGY3 159 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms