RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 SFRP5Q5T4F7 317 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 PLXDC2Q6UX71 529 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 GFRALQ6UXV0 394 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 NHLRC1Q6VVB1 395 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 SLC35D2Q76EJ3 337 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 FCAMRQ8WWV6 532 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 BARX1Q9HBU1 254 aaPredicted RBP12.58□□□□□ -0.4
HMGA1-203ENST00000374116 CHST11Q9NPF2 352 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 SH3BGRL2Q9UJC5 107 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 FOXJ3Q9UPW0 622 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 TRAV8-7A0A075B6U6 113 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 LIPT2A6NK58 231 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 H3BML4 177 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 GATCO43716 136 aaKnown RBP12.58□□□□□ -0.4
HMGA1-203ENST00000374116 KRT33AO76009 404 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 UBBP0CG47 229 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 UBCP0CG48 685 aaKnown RBP12.58□□□□□ -0.4
HMGA1-203ENST00000374116 HLA-DOBP13765 273 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 RPA2P15927 270 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 RIDAP52758 137 aaKnown RBP12.58□□□□□ -0.4
HMGA1-203ENST00000374116 RPS27AP62979 156 aaKnown RBP12.58□□□□□ -0.4
HMGA1-203ENST00000374116 UBA52P62987 128 aaKnown RBP12.58□□□□□ -0.4
HMGA1-203ENST00000374116 TMEM69Q5SWH9 247 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 OR10AC1Q8NH08 325 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 TSEN15Q8WW01 171 aaKnown RBP12.58□□□□□ -0.4
HMGA1-203ENST00000374116 FOXN4Q96NZ1 517 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 ABHD6Q9BV23 337 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 AUNIPQ9H7T9 357 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 CA10Q9NS85 328 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 STEAP1Q9UHE8 339 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 TINAGQ9UJW2 476 aa12.58□□□□□ -0.4
HMGA1-203ENST00000374116 COA3Q9Y2R0 106 aaPredicted RBP12.58□□□□□ -0.4
HMGA1-203ENST00000374116 LINC00587B1AMM8 73 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 CREBL2O60519 120 aaPredicted RBP12.57□□□□□ -0.4
HMGA1-203ENST00000374116 MAS1P04201 325 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 ZNF823P16415 610 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 PTH2RP49190 550 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 B3GALT5-AS1P59052 145 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 PSMA6P60900 246 aaKnown RBP12.57□□□□□ -0.4
HMGA1-203ENST00000374116 SRYQ05066 204 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 DHRS7BQ6IAN0 325 aaPredicted RBP12.57□□□□□ -0.4
HMGA1-203ENST00000374116 ZSCAN2Q7Z7L9 614 aaPredicted RBP12.57□□□□□ -0.4
HMGA1-203ENST00000374116 CCDC36Q8IYA8 594 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 OR51A4Q8NGJ6 313 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 OR52N5Q8NH56 324 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 KCNK17Q96T54 332 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 HRASLSQ9HDD0 168 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 ALKBH4Q9NXW9 302 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 RASL12Q9NYN1 266 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 OPN4Q9UHM6 478 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 B3GALT5Q9Y2C3 310 aa12.57□□□□□ -0.4
HMGA1-203ENST00000374116 POM121CA8CG34 1229 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 TEX46H3BTG2 121 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 ATG12O94817 140 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 MPGP29372 298 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 VEGFCP49767 419 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 MPPED2Q15777 294 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 ODF4Q2M2E3 257 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 MOB3CQ70IA8 216 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 CATSPERDQ86XM0 798 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 SERPINA12Q8IW75 414 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 KDM8Q8N371 416 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 DNAAF1Q8NEP3 725 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 SLC26A10Q8NG04 563 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 OR52I2Q8NH67 350 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 ZNF251Q9BRH9 671 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 CHIAQ9BZP6 476 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 ACKR4Q9NPB9 350 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 SERINC1Q9NRX5 453 aa12.56□□□□□ -0.4
HMGA1-203ENST00000374116 A0A1W2PNV4 684 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 KHDRBS3O75525 346 aaKnown RBP12.55□□□□□ -0.4
HMGA1-203ENST00000374116 PNPP00491 289 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 IGHG3P01860 377 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 S100A8P05109 93 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 GNLYP22749 145 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 CDK2P24941 298 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 ADH6P28332 368 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 GFRA1P56159 465 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 POU3F1Q03052 451 aaPredicted RBP12.55□□□□□ -0.4
HMGA1-203ENST00000374116 PCK2Q16822 640 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 EIF2S3LQ2VIR3 472 aaKnown RBP12.55□□□□□ -0.4
HMGA1-203ENST00000374116 WDFY1Q8IWB7 410 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 NARS2Q96I59 477 aaKnown RBP12.55□□□□□ -0.4
HMGA1-203ENST00000374116 ARL6Q9H0F7 186 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 PLSCR2Q9NRY7 297 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 B3GAT1Q9P2W7 334 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 SLC22A13Q9Y226 551 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 LRP12Q9Y561 859 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 KDM4BO94953 1096 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 SFTPDP35247 375 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 P2RY4P51582 365 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 TAS2R20P59543 309 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 DEFA5Q01523 94 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 ZNF239Q16600 458 aaKnown RBP12.55□□□□□ -0.4
HMGA1-203ENST00000374116 KRTCAP3Q53RY4 240 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 TMEM255AQ5JRV8 349 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 OTPQ5XKR4 325 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 OR7E24Q6IFN5 339 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 MTFR2Q6P444 385 aa12.55□□□□□ -0.4
HMGA1-203ENST00000374116 DEGS2Q6QHC5 323 aa12.55□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms