RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 DAPP51397 102 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 PSMA6P60900 246 aaKnown RBP18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 APOFQ13790 326 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 CD276Q5ZPR3 534 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 FAM90A1Q86YD7 464 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 C1orf147Q96MC9 270 aaPredicted RBP18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 TECTBQ96PL2 329 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 PPP1R3EQ9H7J1 279 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 ZMAT3Q9HA38 289 aaKnown RBP18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 KIF17Q9P2E2 1029 aa18.03■□□□□ 0.48
CCDC28B-201ENST00000373602 TRAV40A0A0B4J280 105 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 DNAJC9-AS1A6NH13 148 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 GYPAP02724 150 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 GNALP38405 381 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 MTNR1AP48039 350 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 FGF12P61328 243 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 BAMBIQ13145 260 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 WDR82Q6UXN9 313 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 GALNT4Q8N4A0 578 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 FTMTQ8N4E7 242 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 OR5K1Q8NHB7 308 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 LRRC29Q8WV35 223 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 ITPKCQ96DU7 683 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 TEAD3Q99594 435 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 PAPOLGQ9BWT3 736 aaKnown RBP18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 YIPF3Q9GZM5 350 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 TLNRD1Q9H1K6 362 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 SMURF1Q9HCE7 757 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 LAMP5Q9UJQ1 280 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 LRP12Q9Y561 859 aa18.02■□□□□ 0.48
CCDC28B-201ENST00000373602 CCDC182A6NF36 153 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 LIPFP07098 398 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 ACKR3P25106 362 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 HCCSP53701 268 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 CSNK2BP67870 215 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 IL5RAQ01344 420 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 PTGES3Q15185 160 aaKnown RBP18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 OR8B12Q8NGG6 310 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 LYZL4Q96KX0 146 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 MICU1Q9BPX6 476 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 RASSF4Q9H2L5 321 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 KAAG1Q9UBP8 84 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 ZNF391Q9UJN7 358 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 MPC1Q9Y5U8 109 aa18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 SOX21Q9Y651 276 aaPredicted RBP18.01■□□□□ 0.47
CCDC28B-201ENST00000373602 IGHV3OR15-7A0A075B7D8 119 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 ANXA2P2A6NMY6 339 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 CST4P01036 141 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 MUC1P15941 1255 aaPredicted RBP18■□□□□ 0.47
CCDC28B-201ENST00000373602 CFHR2P36980 270 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 ESRRGP62508 458 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 C11orf91Q3C1V1 193 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 KCTD18Q6PI47 426 aaPredicted RBP18■□□□□ 0.47
CCDC28B-201ENST00000373602 KRT77Q7Z794 578 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 C3orf56Q8N813 242 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 DUX5Q96PT3 197 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 ABCB9Q9NP78 766 aa18■□□□□ 0.47
CCDC28B-201ENST00000373602 ACOD1A6NK06 481 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 ZNF879B4DU55 563 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 CLDN34H7C241 214 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 FCN3O75636 299 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 HKR1P10072 659 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 BPIFB3P59826 476 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 POU4F2Q12837 409 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 PRDX4Q13162 271 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 ATP6AP1Q15904 470 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 MICBQ29980 383 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 AWAT1Q58HT5 328 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 LCN1P1Q5VSP4 162 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 DEGS2Q6QHC5 323 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 OR5P3Q8WZ94 311 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 RTL8AQ9BWD3 113 aa17.99■□□□□ 0.47
CCDC28B-201ENST00000373602 ZNF850A8MQ14 1090 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 SRRM5B3KS81 715 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 DVL1O14640 695 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 CDIPTO14735 213 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 TMPRSS2O15393 492 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 PRKYO43930 277 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 RNASE1P07998 156 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 MRPL3P09001 348 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 MMP9P14780 707 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 RASSF2P50749 326 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 GPR157Q5UAW9 335 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 PNLDC1Q8NA58 520 aaKnown RBP17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 PRRG3Q9BZD7 231 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 FAM206AQ9NX38 181 aa17.98■□□□□ 0.47
CCDC28B-201ENST00000373602 TMEM210A6NLX4 147 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 P2RY10O00398 339 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 MITFO75030 526 aaPredicted RBP17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 ECDO95905 644 aaPredicted RBP17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 SFTPBP07988 381 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 DCTDP32321 178 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 ROM1Q03395 351 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 SLC9A3R2Q15599 337 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 FAM76BQ5HYJ3 339 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 BRD3OSQ6XYD6 125 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 BTN2A1Q7KYR7 527 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 KRT74Q7RTS7 529 aa17.97■□□□□ 0.47
CCDC28B-201ENST00000373602 OR10Z1Q8NGY1 313 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms