RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 TO15178 435 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 LRP3O75074 770 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 IL2RAP01589 272 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 FAHP16930 419 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 CFPP27918 469 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 APOBEC1P41238 236 aaKnown RBP10.72□□□□□ -0.69
CLIP3-201ENST00000360535 QRFPP83859 136 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 PHF19Q5T6S3 580 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 RPL7L1Q6DKI1 246 aaKnown RBP10.72□□□□□ -0.69
CLIP3-201ENST00000360535 HOGA1Q86XE5 327 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 PNLDC1Q8NA58 520 aaKnown RBP10.72□□□□□ -0.69
CLIP3-201ENST00000360535 APCDD1LQ8NCL9 501 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 PURGQ9UJV8 347 aaKnown RBP10.72□□□□□ -0.69
CLIP3-201ENST00000360535 LSM5Q9Y4Y9 91 aaKnown RBP10.72□□□□□ -0.69
CLIP3-201ENST00000360535 FLVCR1Q9Y5Y0 555 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 MED6O75586 246 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 WDPCPO95876 746 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 IGHG1P01857 330 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 CHRFAM7AQ494W8 412 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 SPAG16Q8N0X2 631 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 OR5AS1Q8N127 324 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 KCNG3Q8TAE7 436 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 OR6C1Q96RD1 312 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 GPR27Q9NS67 375 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 SLC2A8Q9NY64 477 aa10.72□□□□□ -0.69
CLIP3-201ENST00000360535 H3BMH7 237 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 SIGLEC6O43699 453 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 GUCA1AP43080 201 aaPredicted RBP10.71□□□□□ -0.69
CLIP3-201ENST00000360535 CLDN17P56750 224 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 LYPD6Q86Y78 171 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 ASB13Q8WXK3 278 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 TOMM40LQ969M1 308 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 MVB12AQ96EY5 273 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 WDR77Q9BQA1 342 aaPredicted RBP10.71□□□□□ -0.69
CLIP3-201ENST00000360535 AKIRIN1Q9H9L7 192 aaPredicted RBP10.71□□□□□ -0.69
CLIP3-201ENST00000360535 B3GAT1Q9P2W7 334 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 CPAMD8Q8IZJ3 1885 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 TEX13DA0A0J9YY54 714 aaPredicted RBP10.71□□□□□ -0.69
CLIP3-201ENST00000360535 A0A1W2PR77 199 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 FAM221AA4D161 298 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 TMEM14DPA8MWL7 114 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 IGHMP01871 453 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 FCGR2AP12318 317 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 OR2A2Q6IF42 318 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 ETV3LQ6ZN32 361 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 C6orf201Q7Z4U5 140 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 C20orf196Q8IYI0 205 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 DTWD2Q8NBA8 298 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 OR4A4PQ8NGN8 299 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 OR13G1Q8NGZ3 307 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 STOML3Q8TAV4 291 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 ST8SIA1Q92185 356 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 CMSS1Q9BQ75 279 aaKnown RBP10.71□□□□□ -0.69
CLIP3-201ENST00000360535 RBM24Q9BX46 236 aaKnown RBP10.71□□□□□ -0.69
CLIP3-201ENST00000360535 OR10A2Q9H208 303 aa10.71□□□□□ -0.69
CLIP3-201ENST00000360535 MYOZ1Q9NP98 299 aaPredicted RBP10.71□□□□□ -0.69
CLIP3-201ENST00000360535 SHANK1Q9Y566 2161 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 OR5H15A6NDH6 313 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 PIAS2O75928 621 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 DBHP09172 617 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 PDCD1Q15116 288 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 SP6Q3SY56 376 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 DEGS2Q6QHC5 323 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF441Q8N8Z8 693 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 PHYHIPLQ96FC7 376 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 UQCC2Q9BRT2 126 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 URM1Q9BTM9 101 aaKnown RBP10.71□□□□□ -0.7
CLIP3-201ENST00000360535 GPR132Q9UNW8 380 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 B3GALT5Q9Y2C3 310 aa10.71□□□□□ -0.7
CLIP3-201ENST00000360535 ANGPTL7O43827 346 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 GDF9O60383 454 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 SFT2D2O95562 160 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 CD80P33681 288 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 OPRM1P35372 400 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 PABPC1L2AQ5JQF8 200 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 ANKRD37Q7Z713 158 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 LINC00518Q8N0U6 118 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 PTX4Q96A99 478 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF160Q9HCG1 818 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 ALKBH4Q9NXW9 302 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 PRELID3BQ9Y3B1 194 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 RRADP55042 308 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 TAS2R31P59538 309 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 FXYD4P59646 89 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 RIPPLY1Q0D2K3 151 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 PDZK1IP1Q13113 114 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 SMAD4Q13485 552 aaKnown RBP10.7□□□□□ -0.7
CLIP3-201ENST00000360535 IAH1Q2TAA2 248 aaPredicted RBP10.7□□□□□ -0.7
CLIP3-201ENST00000360535 NKAIN1Q4KMZ8 207 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 THEM4Q5T1C6 240 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 SMRP1Q8NCR6 262 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 ZNF501Q96CX3 271 aaPredicted RBP10.7□□□□□ -0.7
CLIP3-201ENST00000360535 WDFY4Q6ZS81 3184 aa10.7□□□□□ -0.7
CLIP3-201ENST00000360535 IGKV1-9A0A0C4DH69 117 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 CHRM2P08172 466 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 CBR1P16152 277 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 KCNJ3P48549 501 aa10.69□□□□□ -0.7
CLIP3-201ENST00000360535 SUPT4H1P63272 117 aaKnown RBP10.69□□□□□ -0.7
CLIP3-201ENST00000360535 CYCSP99999 105 aaKnown RBP10.69□□□□□ -0.7
CLIP3-201ENST00000360535 KISS1Q15726 138 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 78.4 ms