RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 M0R143 59 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 GAPDHP04406 335 aaKnown RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 HMGN2P05204 90 aaKnown RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SPARCP09486 303 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SLC35G4P0C7Q5 338 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 PGA3P0DJD8 388 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SELEP16581 610 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 EPHA1P21709 976 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 GNALP38405 381 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ARRB1P49407 418 aaPredicted RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 GLO1Q04760 184 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 RASGEF1BQ0VAM2 473 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SGCGQ13326 291 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 OR2T2Q6IF00 324 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 LEG1Q6P5S2 330 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 KIRREL2Q6UWL6 708 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 BTNL3Q6UXE8 466 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 TMEM64Q6YI46 380 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 MRPL52Q86TS9 123 aaKnown RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 FJX1Q86VR8 437 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SLC35F2Q8IXU6 374 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 OR10A7Q8NGE5 316 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 OR51A2Q8NGJ7 313 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 OR1N1Q8NGS0 311 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SLC25A36Q96CQ1 311 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 RAB39BQ96DA2 213 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 FAM210BQ96KR6 192 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 RARRES2Q99969 163 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 LGR4Q9BXB1 951 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 NCOR1P1Q9H4R4 102 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 TRAV27A0A087WT01 109 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 A0A1B0GTH9 108 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 OR4C45A6NMZ5 311 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 FAM171A2A8MVW0 826 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF264O43296 627 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 LDB3O75112 727 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 NSA2O95478 260 aaKnown RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 CST4P01036 141 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF28P17035 718 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 TACR3P29371 465 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 APOBEC1P41238 236 aaKnown RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 RND2P52198 227 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ACTBP60709 375 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ACTG1P63261 375 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 IL13RA1P78552 427 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 NXPE4Q6UWF7 544 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 SLC16A14Q7RTX9 510 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 TMPRSS12Q86WS5 348 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF547Q8IVP9 402 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 NOXO1Q8NFA2 376 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 NUS1Q96E22 293 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 THOC3Q96J01 351 aaKnown RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ALKBH3Q96Q83 286 aaPredicted RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 PHB2Q99623 299 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 MCHR1Q99705 422 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 NKX3-1Q99801 234 aaPredicted RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 MBNL1Q9NR56 388 aaKnown RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 AURKAIP1Q9NWT8 199 aaPredicted RBP4.95□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF581Q9P0T4 197 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 CYP8B1Q9UNU6 501 aa4.95□□□□□ -1.62
CSDE1-202ENST00000339438 A0A1W2PQU0 124 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 C4orf51C9J302 202 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 P2RX6O15547 441 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 SRPX2O60687 465 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 C1orf105O95561 183 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 STATHP02808 62 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 FOLR1P15328 257 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NTSR1P30989 418 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 SLC37A1P57057 533 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 HYAL4Q2M3T9 481 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 C1orf194Q5T5A4 169 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 JAGN1Q8N5M9 183 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 AQP3Q92482 292 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CYYR1Q96J86 154 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 OR7D2Q96RA2 312 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CNN2Q99439 309 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 CD180Q99467 661 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 FAAP24Q9BTP7 215 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 EFCAB11Q9BUY7 163 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 TEX12Q9BXU0 123 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 SLC26A1Q9H2B4 701 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 MRM2Q9UI43 246 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 KCNK6Q9Y257 313 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 POLR3KQ9Y2Y1 108 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 NCOA6Q14686 2063 aaPredicted RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 K7EP13 123 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 IFNL4K9M1U5 179 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 YPEL1O60688 119 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 GCGP01275 180 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 MAS1P04201 325 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 PGA4P0DJD7 388 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 PGA5P0DJD9 388 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 IRF2P14316 349 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 HIST1H1CP16403 213 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 ZNF708P17019 499 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 RAB6AP20340 208 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 RPS4Y1P22090 263 aaKnown RBP4.94□□□□□ -1.62
CSDE1-202ENST00000339438 GLIPR1P48060 266 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 DIO1P49895 249 aa4.94□□□□□ -1.62
CSDE1-202ENST00000339438 RAB32Q13637 225 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms