RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 GSTZ1O43708 216 aaPredicted RBP13.4□□□□□ -0.26
LIMS1-202ENST00000338045 CCL2P13500 99 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 ZNF14P17017 642 aaPredicted RBP13.4□□□□□ -0.26
LIMS1-202ENST00000338045 CDK2P24941 298 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 APLNRP35414 380 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 PTH2RP49190 550 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 GSK3AP49840 483 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 EFNB2P52799 333 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 UBE2NP61088 152 aaKnown RBP13.4□□□□□ -0.26
LIMS1-202ENST00000338045 P2RY6Q15077 328 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 UNQ6494/PRO21346Q6UXR6 183 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 BIVMQ86UB2 503 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 LINC00469Q8N7U9 141 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 MS4A3Q96HJ5 214 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 TP63Q9H3D4 680 aaPredicted RBP13.4□□□□□ -0.26
LIMS1-202ENST00000338045 KCNK15Q9H427 330 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 FBLN5Q9UBX5 448 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 ZNF835Q9Y2P0 537 aa13.4□□□□□ -0.26
LIMS1-202ENST00000338045 INTS1Q8N201 2190 aaKnown RBP13.39□□□□□ -0.27
LIMS1-202ENST00000338045 PLA2G10O15496 165 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 CTAG2O75638 210 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 BPNT1O95861 308 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 CCNOP22674 350 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 QRFPP83859 136 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 TAB1Q15750 504 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 CRIP3Q6Q6R5 217 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 GDPD3Q7L5L3 318 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 RNF144BQ7Z419 303 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 IZUMO1Q8IYV9 350 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 C17orf78Q8N4C9 275 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 RFT1Q96AA3 541 aa13.39□□□□□ -0.27
LIMS1-202ENST00000338045 THAP7Q9BT49 309 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-202ENST00000338045 REPIN1Q9BWE0 567 aaKnown RBP13.39□□□□□ -0.27
LIMS1-202ENST00000338045 OPN3Q9H1Y3 402 aaPredicted RBP13.39□□□□□ -0.27
LIMS1-202ENST00000338045 MRPS7Q9Y2R9 242 aaKnown RBP13.39□□□□□ -0.27
LIMS1-202ENST00000338045 PRRG2O14669 202 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 MAGEB3O15480 346 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 XRCC3O43542 346 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 HCKP08631 526 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 RAB6AP20340 208 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 FAM209AQ5JX71 171 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 TMEM69Q5SWH9 247 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 ZBTB37Q5TC79 503 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 HACD4Q5VWC8 232 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 BEND4Q6ZU67 534 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 KRT74Q7RTS7 529 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 DOLPP1Q86YN1 238 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 WDR31Q8NA23 367 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 C19orf18Q8NEA5 215 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 SLC30A7Q8NEW0 376 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 SMIM4Q8WVI0 70 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 YIPF5Q969M3 257 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 SFXN3Q9BWM7 321 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 ASF1BQ9NVP2 202 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 LANCL1O43813 399 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 ICMTO60725 284 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 GLI4P10075 376 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 WNT5AP41221 380 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 RFX2P48378 723 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 GK2Q14410 553 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-202ENST00000338045 KISS1Q15726 138 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 GFRALQ6UXV0 394 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 ANGPTL5Q86XS5 388 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 PAQR4Q8N4S7 273 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-202ENST00000338045 C15orf40Q8WUR7 153 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 SPSB1Q96BD6 273 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 C1orf147Q96MC9 270 aaPredicted RBP13.38□□□□□ -0.27
LIMS1-202ENST00000338045 SPACA5Q96QH8 159 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 FAIMQ9NVQ4 179 aa13.38□□□□□ -0.27
LIMS1-202ENST00000338045 NCOR2Q9Y618 2525 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 PIEZO2Q9H5I5 2752 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 GGT3PA6NGU5 568 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 J3QW42 95 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 EEF1E1O43324 174 aaKnown RBP13.37□□□□□ -0.27
LIMS1-202ENST00000338045 GMDSO60547 372 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 NGFP01138 241 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 ALDH3B1P43353 468 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 TAS2R20P59543 309 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 MRPS10P82664 201 aaKnown RBP13.37□□□□□ -0.27
LIMS1-202ENST00000338045 DGCR2P98153 550 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 TSC22D1Q15714 1073 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 PRR30Q53SZ7 412 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-202ENST00000338045 CLVS2Q5SYC1 327 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 C3P1Q6ZMU1 363 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 DNM1P46Q6ZS02 220 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 CXorf67Q86X51 503 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-202ENST00000338045 UBASH3BQ8TF42 649 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 ZCCHC14Q8WYQ9 949 aaKnown RBP13.37□□□□□ -0.27
LIMS1-202ENST00000338045 C11orf54Q9H0W9 315 aaPredicted RBP13.37□□□□□ -0.27
LIMS1-202ENST00000338045 OPA3Q9H6K4 179 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 OBP2BQ9NPH6 170 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 DIABLOQ9NR28 239 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 RAB22AQ9UL26 194 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 STARD10Q9Y365 291 aa13.37□□□□□ -0.27
LIMS1-202ENST00000338045 CACNA1AO00555 2505 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 A0A0A6YYH2 397 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 A6NJ64 397 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 TMEM14DPA8MWL7 114 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 GABARAPH6UMI1 98 aa13.36□□□□□ -0.27
LIMS1-202ENST00000338045 SSX4O60224 188 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms