RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 IGHV2-70DA0A0C4DH43 119 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 POLR2IP36954 125 aaKnown RBP13.59□□□□□ -0.23
LSM1-201ENST00000311351 GNALP38405 381 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 PSMB10P40306 273 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 EFNB1P98172 346 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 MZT1Q08AG7 82 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 AADACL4Q5VUY2 407 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 WDR25Q64LD2 544 aaPredicted RBP13.59□□□□□ -0.23
LSM1-201ENST00000311351 ZNF841Q6ZN19 808 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 MEPCEQ7L2J0 689 aaKnown RBP13.59□□□□□ -0.23
LSM1-201ENST00000311351 C11orf53Q8IXP5 236 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 C10orf67Q8IYJ2 551 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 BPIFB2Q8N4F0 458 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 CSNK2A3Q8NEV1 391 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 OR1M1Q8NGA1 313 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 DACT3Q96B18 629 aaPredicted RBP13.59□□□□□ -0.23
LSM1-201ENST00000311351 ITPKCQ96DU7 683 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 CENPNQ96H22 339 aaPredicted RBP13.59□□□□□ -0.23
LSM1-201ENST00000311351 OR8B4Q96RC9 309 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 RIBC2Q9H4K1 309 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 FAM206AQ9NX38 181 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 CLN8Q9UBY8 286 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 FBN3Q75N90 2809 aa13.59□□□□□ -0.23
LSM1-201ENST00000311351 A0A0A6YYJ9 748 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 OOEPA6NGQ2 149 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 C22orf46C9J442 243 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 PHYHO14832 338 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 MAGEB4O15481 346 aaPredicted RBP13.58□□□□□ -0.24
LSM1-201ENST00000311351 GYPAP02724 150 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 HILS1P60008 231 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 MFGE8Q08431 387 aaPredicted RBP13.58□□□□□ -0.24
LSM1-201ENST00000311351 POU4F2Q12837 409 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 PRDX4Q13162 271 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 KPNB1Q14974 876 aaKnown RBP13.58□□□□□ -0.24
LSM1-201ENST00000311351 NXNL2Q5VZ03 156 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 KCTD18Q6PI47 426 aaPredicted RBP13.58□□□□□ -0.24
LSM1-201ENST00000311351 FAM90A1Q86YD7 464 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 SLC35F2Q8IXU6 374 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 LRRC29Q8WV35 223 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 TECTBQ96PL2 329 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 FGF23Q9GZV9 251 aaPredicted RBP13.58□□□□□ -0.24
LSM1-201ENST00000311351 ADGRL4Q9HBW9 690 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 SMURF1Q9HCE7 757 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 IKZF2Q9UKS7 526 aa13.58□□□□□ -0.24
LSM1-201ENST00000311351 IGHV3OR16-10A0A075B7F0 116 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 TMEM269A0A1B0GVZ9 245 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 SLC22A31A6NKX4 558 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 ANXA2P2A6NMY6 339 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 ZNF850A8MQ14 1090 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 ADAM20O43506 726 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 CPT2P23786 658 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 ELF3P78545 371 aaPredicted RBP13.57□□□□□ -0.24
LSM1-201ENST00000311351 ROM1Q03395 351 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 PAX8Q06710 450 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 BTNL3Q6UXE8 466 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 WDR82Q6UXN9 313 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 PLEKHG7Q6ZR37 379 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 ZNF679Q8IYX0 411 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 FTMTQ8N4E7 242 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 HPSE2Q8WWQ2 592 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 RAB40AQ8WXH6 277 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 PPP1R14AQ96A00 147 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 SEH1LQ96EE3 360 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 PKP2Q99959 881 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 MICU1Q9BPX6 476 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 NUDT16L1Q9BRJ7 211 aaKnown RBP13.57□□□□□ -0.24
LSM1-201ENST00000311351 SUCNR1Q9BXA5 334 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 GABARAPL3Q9BY60 117 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 MROQ9BYG7 248 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 ESM1Q9NQ30 184 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 ZNF69Q9UC07 566 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 ENOPH1Q9UHY7 261 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 TMEM14AQ9Y6G1 99 aa13.57□□□□□ -0.24
LSM1-201ENST00000311351 TRAV38-1A0A0B4J264 116 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 TRAV40A0A0B4J280 105 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 A0A1B0GW55 424 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 H3BNX3 289 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP13.56□□□□□ -0.24
LSM1-201ENST00000311351 FCN3O75636 299 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 APOL3O95236 402 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 LHBP01229 141 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 DUX4L2P0CJ85 424 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 DUX4L3P0CJ86 424 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 DUX4L4P0CJ87 422 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 DUX4L5P0CJ88 424 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 DUX4L6P0CJ89 424 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 DUX4L7P0CJ90 424 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 IGHV4-38-2P0DP08 117 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 RIDAP52758 137 aaKnown RBP13.56□□□□□ -0.24
LSM1-201ENST00000311351 CXCR4P61073 352 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 ACTR3P61158 418 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 IL5RAQ01344 420 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 KCNJ8Q15842 424 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 DEGS2Q6QHC5 323 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 DUX4L9Q6RFH8 374 aaPredicted RBP13.56□□□□□ -0.24
LSM1-201ENST00000311351 ZNF322Q6U7Q0 402 aaPredicted RBP13.56□□□□□ -0.24
LSM1-201ENST00000311351 USP43Q70EL4 1123 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 COMMD2Q86X83 199 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 GID4Q8IVV7 300 aa13.56□□□□□ -0.24
LSM1-201ENST00000311351 BCL6BQ8N143 479 aaPredicted RBP13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms