RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 ST8SIA4Q92187 359 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 ZDHHC16Q969W1 377 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 TEX12Q9BXU0 123 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 RGCCQ9H4X1 137 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 KLHDC2Q9Y2U9 406 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 RHBDD3Q9Y3P4 386 aa16.2■□□□□ 0.18
LIME1-201ENST00000309546 ANXA2P2A6NMY6 339 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 ZNF879B4DU55 563 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 DYNC1I1O14576 645 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 TNFRSF13BO14836 293 aaPredicted RBP16.19■□□□□ 0.18
LIME1-201ENST00000309546 TMPRSS2O15393 492 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 TOX4O94842 621 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 ANXA8P13928 327 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 CDK5Q00535 292 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 DEFB112Q30KQ8 113 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 TEX36Q5VZQ5 186 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 RHOUQ7L0Q8 258 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 C11orf53Q8IXP5 236 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 FTMTQ8N4E7 242 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 PNLDC1Q8NA58 520 aaKnown RBP16.19■□□□□ 0.18
LIME1-201ENST00000309546 BCAS4Q8TDM0 211 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 TAF15Q92804 592 aaKnown RBP eCLIP16.19■□□□□ 0.18
LIME1-201ENST00000309546 MICU1Q9BPX6 476 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 RNPEPL1Q9HAU8 725 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 DNAJB9Q9UBS3 223 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 NBEAL1Q6ZS30 2694 aa16.19■□□□□ 0.18
LIME1-201ENST00000309546 CLDN34H7C241 214 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 DVL1O14640 695 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 HOXA3O43365 443 aaPredicted RBP16.18■□□□□ 0.18
LIME1-201ENST00000309546 TIPRLO75663 272 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 LHBP01229 141 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 LIPFP07098 398 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 PSMA6P60900 246 aaKnown RBP16.18■□□□□ 0.18
LIME1-201ENST00000309546 GMFBP60983 142 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 MICBQ29980 383 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 SLC35D3Q5M8T2 416 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 METTL11BQ5VVY1 283 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 WDR82Q6UXN9 313 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 TBX15Q96SF7 602 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 CCL13Q99616 98 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 RTL8AQ9BWD3 113 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 TNFRSF19Q9NS68 423 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 LAMP5Q9UJQ1 280 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 POMPQ9Y244 141 aa16.18■□□□□ 0.18
LIME1-201ENST00000309546 A0A1B0GW55 424 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 TCRBV3S1A0A5B6 114 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 ZNF850A8MQ14 1090 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 P2RY10O00398 339 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 CDIPTO14735 213 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 DNAJC8O75937 253 aaPredicted RBP16.17■□□□□ 0.18
LIME1-201ENST00000309546 MRPL3P09001 348 aaKnown RBP16.17■□□□□ 0.18
LIME1-201ENST00000309546 DUX4L2P0CJ85 424 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 DUX4L3P0CJ86 424 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 DUX4L4P0CJ87 422 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 DUX4L5P0CJ88 424 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 DUX4L6P0CJ89 424 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 DUX4L7P0CJ90 424 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 ELF3P78545 371 aaPredicted RBP16.17■□□□□ 0.18
LIME1-201ENST00000309546 IL5RAQ01344 420 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 PRDX4Q13162 271 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 APOFQ13790 326 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 SNCBQ16143 134 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 SNAPC1Q16533 368 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 WDR38Q5JTN6 314 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 DUX4L9Q6RFH8 374 aaPredicted RBP16.17■□□□□ 0.18
LIME1-201ENST00000309546 KCTD8Q6ZWB6 473 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 BTN2A1Q7KYR7 527 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 KRT77Q7Z794 578 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 FGFRL1Q8N441 504 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 OR8B12Q8NGG6 310 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 SGMS2Q8NHU3 365 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 SLC7A6OSQ96CW6 309 aaPredicted RBP16.17■□□□□ 0.18
LIME1-201ENST00000309546 ITPKCQ96DU7 683 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 SEH1LQ96EE3 360 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 WDFY2Q96P53 400 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 SLC25A19Q9HC21 320 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 TVP23BQ9NYZ1 205 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 DUX4Q9UBX2 424 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 LRP12Q9Y561 859 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 MPC1Q9Y5U8 109 aa16.17■□□□□ 0.18
LIME1-201ENST00000309546 SPRY1O43609 319 aaPredicted RBP16.16■□□□□ 0.18
LIME1-201ENST00000309546 FCN3O75636 299 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 MMP9P14780 707 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 MUC1P15941 1255 aaPredicted RBP16.16■□□□□ 0.18
LIME1-201ENST00000309546 SLC2A5P22732 501 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 ACKR3P25106 362 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 HCCSP53701 268 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 GALNT4Q8N4A0 578 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 PIGCQ92535 297 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 PKP2Q99959 881 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 ZNF747Q9BV97 191 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 TTTY10Q9BZA0 68 aa16.16■□□□□ 0.18
LIME1-201ENST00000309546 PAPOLBQ9NRJ5 636 aaKnown RBP16.16■□□□□ 0.18
LIME1-201ENST00000309546 PSMD9O00233 223 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 ARF6P62330 175 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 LCN1P1Q5VSP4 162 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 C16orf87Q6PH81 154 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 SLC36A1Q7Z2H8 476 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 COMMD2Q86X83 199 aa16.15■□□□□ 0.18
LIME1-201ENST00000309546 FAM216BQ8N7L0 139 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms