RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 IL22RA2Q969J5 263 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 ANAPC16Q96DE5 110 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 ISG20L2Q9H9L3 353 aaKnown RBP12.55□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF737O75373 536 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 SLC39A5Q6ZMH5 540 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 PLPP6Q8IY26 295 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF740Q8NDX6 193 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 ADAT1Q9BUB4 502 aaKnown RBP12.55□□□□□ -0.4
CSPG4-201ENST00000308508 LAT2Q9GZY6 243 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 KCND3Q9UK17 655 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 FAM87AP0C7U9 286 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 TWSG1Q9GZX9 223 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 CYSLTR2Q9NS75 346 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 CXCL12P48061 93 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 RPL18Q07020 188 aaKnown RBP12.55□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF816Q0VGE8 651 aaPredicted RBP12.55□□□□□ -0.4
CSPG4-201ENST00000308508 BCORP1Q8N888 145 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 SMIM14Q96QK8 99 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 PRRX2Q99811 253 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 SLC46A2Q9BY10 475 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 AP5S1Q9NUS5 200 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 UQCC1Q9NVA1 299 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 FAHD1Q6P587 224 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 SPICQ8N5J4 248 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 RAB40CQ96S21 281 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 ALOX12BO75342 701 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 B2MP61769 119 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 TTC9Q92623 222 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 SPACA5Q96QH8 159 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 TXNIPQ9H3M7 391 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 NUMBLQ9Y6R0 609 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 PKIAP61925 76 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 OR52N5Q8NH56 324 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 TMEM191AQ9H0A3 160 aa12.55□□□□□ -0.4
CSPG4-201ENST00000308508 NDUFB6O95139 128 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 ST8SIA1Q92185 356 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 ACY3Q96HD9 319 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 SLC45A2Q9UMX9 530 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 TCRBV5S2A0A599 114 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF785A8K8V0 405 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 SEMA7AO75326 666 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 ZBTB25P24278 435 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 HAAOP46952 286 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 CLN3Q13286 438 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 PLA1AQ53H76 456 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 KCPQ6ZWJ8 1503 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 FAM221AA4D161 298 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 CD96P40200 585 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 C21orf62-AS1Q17RA5 79 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 SLC39A11Q8N1S5 342 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 FGF13Q92913 245 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 DEDDO75618 318 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 TIMP1P01033 207 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 SHBQ15464 509 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 ELFN2Q5R3F8 820 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.54□□□□□ -0.4
CSPG4-201ENST00000308508 PELI1Q96FA3 418 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF426Q9BUY5 554 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 MANBALQ9NQG1 85 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.54□□□□□ -0.4
CSPG4-201ENST00000308508 RIMKLAQ8IXN7 391 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 CLDN23Q96B33 292 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 IL21Q9HBE4 155 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 FUT6P51993 359 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 MOB3AQ96BX8 217 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 C19orf43Q9BQ61 176 aa12.54□□□□□ -0.4
CSPG4-201ENST00000308508 GALP22466 123 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 CALHM3Q86XJ0 350 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 Q9N2K0 584 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 KDM3BQ7LBC6 1761 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 H3BP45 60 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 ANKRD34CP0C6C1 535 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 SDHBP21912 280 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 HERVK_113P61574 105 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 TMEM267Q0VDI3 215 aaPredicted RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 LINC00696Q6ZRV3 163 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 OR4F17Q8NGA8 305 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 NEIL1Q96FI4 390 aaPredicted RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 PACRGQ96M98 296 aaPredicted RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 OXGR1Q96P68 337 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 DERL3Q96Q80 235 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 CHST6Q9GZX3 395 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 DHCR7Q9UBM7 475 aaKnown RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 K7ERU9 68 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 HRO43593 1189 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 FGF21Q9NSA1 209 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 HMSDA8MTL9 139 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 H3BNC9 293 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 RRP8O43159 456 aaKnown RBP12.53□□□□□ -0.4
CSPG4-201ENST00000308508 GPANK1O95872 356 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 IGHV3-9P01782 118 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 NEURL2Q9BR09 285 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 ZNF385DQ9H6B1 395 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 PHLPP1O60346 1717 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 SLC17A2O00624 439 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 SLC6A1P30531 599 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 ADPRHP54922 357 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 CTF1Q16619 201 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 NKAIN2Q5VXU1 208 aa12.53□□□□□ -0.4
CSPG4-201ENST00000308508 TEX101Q9BY14 249 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms